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1. Gene Predictor(ChemGenome 2.0):Whole Genome Analysis |
2. Bhageerath: Predicts native-like structures for small globular proteins |
3. Sanjeevini: A complete drug design software. |
4. Binding Affinity Prediction of Protein-Ligand Server(BAPPL): Computes the binding free energy of a protein-ligand complex. |
5. Binding Affinity Prediction of Protein-Ligand complex containing Zinc Server (BAPPL-Z): Computes the binding free energy of a metalloprotein-ligand complex containing zinc. |
6. Drug-DNA Interaction Energy (PreDDICTA): Calculates the Drug-DNA interaction energy. |
7. ParDOCK - Automated Server for Rigid Docking: Predicts the binding mode of the ligand in receptor target site. |
9. Automated Version Of Active Site Prediction (AADS): Predicts 10 binding sites in a protein target and docks the uploaded ligand molecule at all 10 sites predicted in an automated mode. |
10. DnaDOCK - Dna Ligand Docking: All-atom energy based Monte Carlo DNA ligand docking |
11. Non Redundant Database of Small Molecules: Virtual high throughput screening of small molecules and their optimization into lead like candidates. |
12. Lipinski Filters: Checks whether a drug satisfies the 5 Lipinski rules. |
13. DNA Sequence to Structure: Generates double helical secondary structure of DNA using conformational parameters taken from experimental fiber-diffraction studies. |
14. Gene Evaluator(ChemGenome 1.1): Characterizes a DNA sequence as gene or nongene |
15. Protein Structure Generation: Structure Generation from given dihedrals |
16. Persistence Length: Filters for Globular Protein Evaluation |
17. Radius of Gyration: Filters for Globular Protein Evaluation |
18. Hydrophobicity: Filters for Globular Protein Evaluation |
19. Packing Fraction: Filters for Globular Protein Evaluation |
20. ProRegIn: Protein Regularity Index |
21. Protein structure optimizer: Energy minimizer for proteins |
22. ProSEE: Scoring Function for Protein Structure Evaluation Calculates intramolecular energy of a protein in component-wise break up. |
23. Superimpose: Fits two molecules and calculates the RMSD between them. |
24. Protein Angle Descriptor: Calculates the angles & dihedral in the main chain of the protein |
25. Wiener Index Calculator: This tool is useful for calculating Wiener index. |
26. RASPD for Preliminary Screening of Drugs: This tool is useful for preliminary screening of drug molecules based on Wiener index calculation. This will predict binding energy of drug/target at a preliminary stage. |
27. BGPred(Beta Gamma Turn Predictor):BG Pred web server predicts beta and gamma turns. |
28. Volume Calculator: Calculates the volume of a molecule |
29. Melting Temperature Predictor (For oligonuclotide): It predicts the melting temperature of short DNA sequences (upto 70 base pairs) at a user defined salt within the specified range. |
30. Genome analysis by melting: It predicts the melting temperature for longer(>70 bases) DNA sequences, and it also gives the melting profile for the sequence. |
31. Transferrable Partial Atomic Charge Model - up to 4 bonds (TPACM4):This tool is used for assignment of partial atomic charge of small molecules. |
32. PROSECSC: PROTEIN SECONDARY STRUCTURE PREDICTION. |
33. Gene Predictor(ChemGenome 3.0): ChemGenome 3.0 is a gene prediction tool that takes a whole genome sequence or a part of the genome of a prokaryote or virus as input and predicts genes along with their coressponding protein sequences in all the six reading frames. |
34.Bhageerath-H: A Homology ab-initio Hybrid Web server for Protein Tertiary Structure Prediction. Starting with sequence, the web server predicts 5 native-like candidate structures for the protein. |
35. pcSM Software: pcSM: Capturing Native Protein Structures with a Physico-Chemical Metric. |
38. SOM Prediction |
40. RM2TS: From Ramchandran Maps to Tertiary Structures of Proteins. |
41. ProtSAV: A Protein Tertiary Structure Analysis and Validation Server |
42. Onco-Regulon Onco-Regulon is an integrated database of regulatory motifs of cancer genes clubbed with Unique Sequence-Predictor (USP) a software suite that identifies unique sequences for each of these regulatory DNA motifs at the specified position in the genome. |
43. Pathogen Specific DNA Drug Finder (PSDDF): PSDDF is a computational protocol for identifying unique DNA sequence(s) in the pathogen which is absent in human and related non-pathogenic strains of the microbe. In order to use the unique sequence as drug target, the protocol, in the second step, uses virtual screening against a million compound library to identify candidate small molecules which can bind to these unique DNA targets in the pathogen only. |
44.SDIndex: A measure for reliable modelability of protein tertiary structure. |
45. PvaxDB: A comprehensive structural repository of P. vivax soluble proteome. |
