BHAGEERATH : An Energy Based Protein Structure Prediction Server
The present version of"Bhageerath" accepts amino acid sequence and secondary structure information to predict 5 candidate structures for the native. It is anticipated that at least one native like structure (RMSD < 7Å without end loops) is present in the final structures. The server has been validated on 80 small globular proteins. Know about Protein Folding
Download BHAGEERATH 1.0 for Solaris 10.0 environment from here.
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Referencs
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[1] S. R. Shenoy and B. Jayaram, "Proteins: sequence to structure and function- current Status", Current Protein and Peptide Science, 2010, 11(7), 498-514. Read Abstract
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[2] B. Jayaram, Kumkum Bhushan, et al., "Bhageerath : An Energy Based Web Enabled Computer Software Suite for Limiting the Search Space of Tertiary Structures of Small Globular Proteins". Nucl. Acids Res., 2006, 34, 6195-6204. Read Paper
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[3] Pooja Narang, Kumkum Bhushan, Surojit Bose, B. Jayaram, "Protein structure evaluation using an all-atom energy based empirical scoring function", J. Biomol. Str. Dyn., 2006, 23, 385-406. Read Abstract
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[4] P. Narang, K. Bhushan, S. Bose and B. Jayaram, "A computational pathway for bracketing native-like structures for small alpha helical globular proteins", Phys. Chem. Chem. Phys., 2005, 7, 2364-2375. Read Abstract
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This Web Tool is funded by Department of Information Technology, DIT
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