Results | viHumans

UniProt ID

Q9YJJ8

Status

Reviewed

Host

Bos Taurus (Bovine) [TaxID: 9913]; Culex Annulus [TaxID: 182211]; Culex Tritaeniorhynchus (Mosquito) [TaxID: 7178]; Homo Sapiens (Human) [TaxID: 9606]; Sus Scrofa (Pig) [TaxID: 9823]

Gene Name

Not Available

Protein Name

Outer capsid protein VP8

Organism Name

Banna Virus (strain Indonesia/JKT-6423/1980) (BAV)

Taxonomic Lineage

Viruses> DsRNA Viruses> Reoviridae> Sedoreovirinae> Seadornavirus> Banna Virus> Banna Virus (strain Indonesia/JKT-6423/1980) (BAV)

RefSeq

NC_004198.1 ;  AF019908.1 ;  NC_004200.1 ;  AF052014.1 ;  NC_004201.1 ;  AF052015.1 ;  NC_004202.1 ;
AF052016.1 ;  NC_004203.1 ;  AF052017.1 ;  NC_004204.1 ;  AF052018.1 ;  NC_004211.1 ;  AF133430.1 ;
NC_004217.1 ;  AF134514.1 ;  NC_004218.1 ;  AF134515.1 ;  NC_004219.1 ;  AF134516.1 ;  NC_004220.1 ;
AF134517.1 ;  NC_004221.1 ;  AF134518.1

PubMed ID

9780055

Pathways Involved

Various pathway(s) in which protein is involved

KEGG

vg:995345

Reactome

Not Available

Sequence

							MANRATSAFLDNPHPVGVNYVDEGSRQFVAVAELLASKLIASSRESDESNSDVPFVQAYSKFADDNPRHLRVKTGGKMANALTNVIRSYYSINAPAIVPQ
VEIDRLASKATVSGDMYNSYAVFNSVPIVEVLSPAQTTVSIVGSDRADVTMLNTGAGAANITFNFGQIAETVILKGSVPFQLARANQPMPAARFTYKLRP
LDGPFIVVLPVGNPLVISATAATRIQVPLAFNKALVESGFQTAMNDGLFDAQNVNYYSSFDEFIIAQYHALDGINRVSTCVVLGLALQAYDQMRRALPVR
RV
						

Length

302

Alternate Sequence

Not Available

Non-standard residue

Not Available

Date of last Sequence modification

01-05-1999

Protein Existence

Inferred from homology

Amino Acid composition

Amino Acid	Count	% Frequency	Amino Acid	Count	% Frequency
Alanine (A)			Leucine (L)
Arginine (R)			Lysine (K)
Asparagine (N)			Methionine (M)
Aspartic Acid (D)			Phenylalanine (F)
Cysteine (C)			Proline (P)
Glutamine (Q)			Serine (S)
Glutamic Acid (E)			Threonine (T)
Glycine (G)			Tryptophan (W)
Histidine (H)			Tyrosine (Y)
Isoleucine (I)			Valine (V)

Sum of Absolute Deviation from Amino Acid Occurrence Frequencies

Aliphatic Index

Instability Index

Secondary Structure features

% Number of Residues in Helices	% Number of Residues in Strands	% Number of Residues in Coils

Structural Difficulty(SD) index

Role(s)

Self assembles to form an icosahedral capsid with a T=13 symmetry, which consists of 230 trimers, with channels at each of its five-fold vertices.

EC

Not Available

Experimentally known GO terms

GO:0019028

Subcellular Location

Virion . Note=Outer capsid protein.

Domain(s)

Not Available

Motif(s)

Not Available

Methods of 3D structure generation

Predicted/Modelled

Experimetally known structure

Not Available

Active Site(s)

Not Available

Predicted 3D Structures

Protein couldn't be modeled using I-Tasser and Raptor X because of length constraints of the software.

Experimentally known Ligand(s)

Not Available

Virtually Screened Ligands

Virtual screening has been performed using RASPD

						Million Molecules

					
Best 20 Hit molecules 
Not Available