Results | viHumans

UniProt ID

Q9QU30

Status

Reviewed

Host

Homo Sapiens (Human) [TaxID: 9606]

Gene Name

ORF1[Gene ID: 9086758 ]

Protein Name

Capsid protein

Organism Name

Torque Teno Mini Virus 1 (isolate TLMV-CBD279)

Taxonomic Lineage

Viruses> SsDNA Viruses> Anelloviridae> Betatorquevirus> Torque Teno Mini Virus 1> Torque Teno Mini Virus 1 (isolate TLMV-CBD279)

RefSeq

NC_002076.2 ; AB041007.1

PubMed ID

10881684

Pathways Involved

Various pathway(s) in which protein is involved

KEGG

vg:9086758

Reactome

Not Available

Sequence

							MPPFYYRRRWYSNPWRRKRLRFRRRRLRRPIRKRFRRRRWVRRRRFFRFKRKLRKIRIDQWQPETIRKCHVKGNLCLLTCGRGNINHNYILTSESYVPTS
EPGGGSWSILQMTTRVLYDEYKAARNWWTKSNSLLPLTKYIRCKLKFYRSDQTDYIVTIQRTGPFEVTLESYLSTQPSRHLMNHKAFIVPKLGRGPNKET
YVKKIVRPPALFQSKWYFSQDIYNTPLFILTVSSCSLDQMYAPQDQISTNISLFSLNTNVFQINNWHKQPYTTKAASTLETYLYCYHNGHEPTQELKWKD
IILLGNMTNYTDGKKYNTSGTTPLDLFKTENKPYWGNVFTNLNQDQDVIIYYGTKPKQDDNWTSTAPILPITSLYVECRYNPFKDKGTGNKVYLVPTDSG
LGSFLTLPTKSELIITDLPLWLITWGWIEWLKKSRPVAHIEEEYQVVIQSKYIHPQLPCYVLIDKYFRHPPEGQHYITELSETDKLHWHPKYSMQTEQLE
LIAETGPAAPKINNTKQIEAHLNYDFLFKWGGSPAPMETITDPAEQEKFPSPSNQLQGLQIESPGKPKQYYLYTFDEKRSELTMPAAKRLKKDFTTPTFF
TDFGTKDIPLKTQEETDQISEDEEIETSLPKEDHLKQQLQRTRQYYREGIRKLLKTKKLFPL
						

Length

662

Alternate Sequence

Not Available

Non-standard residue

Not Available

Date of last Sequence modification

01-05-2000

Protein Existence

Inferred from homology

Amino Acid composition

Amino Acid	Count	% Frequency	Amino Acid	Count	% Frequency
Alanine (A)			Leucine (L)
Arginine (R)			Lysine (K)
Asparagine (N)			Methionine (M)
Aspartic Acid (D)			Phenylalanine (F)
Cysteine (C)			Proline (P)
Glutamine (Q)			Serine (S)
Glutamic Acid (E)			Threonine (T)
Glycine (G)			Tryptophan (W)
Histidine (H)			Tyrosine (Y)
Isoleucine (I)			Valine (V)

Sum of Absolute Deviation from Amino Acid Occurrence Frequencies

Aliphatic Index

Instability Index

Secondary Structure features

% Number of Residues in Helices	% Number of Residues in Strands	% Number of Residues in Coils

Structural Difficulty(SD) index

Role(s)

Self-assembles to form an icosahedral capsid with a T=1 symmetry, about 30 nm in diameter, and consisting of 60 capsid proteins. The capsid encapsulates the genomic DNA. Capsid protein is involved in attachment and entry into the host cell (By similarity).

EC

Not Available

Experimentally known GO terms

GO:0039615

Subcellular Location

Virion .

Domain(s)

Not Available

Motif(s)

Not Available

Methods of 3D structure generation

Predicted/Modelled

Experimetally known structure

Not Available

Active Site(s)

Not Available

Predicted 3D Structures

Protein couldn't be modeled using I-Tasser and Raptor X because of length constraints of the software.

Experimentally known Ligand(s)

Not Available

Virtually Screened Ligands

Virtual screening has been performed using RASPD

						Million Molecules

					
Best 20 Hit molecules 
Not Available