Results | viHumans

UniProt ID

Q69551

Status

Reviewed

Host

Homo Sapiens (Human) [TaxID: 9606]

Gene Name

U17/U16

Protein Name

Protein U17/U16

Organism Name

Human Herpesvirus 6A (strain Uganda-1102) (HHV-6 Variant A) (Human B Lymphotropic Virus)

Taxonomic Lineage

Viruses> DsDNA Viruses> No RNA Stage> Herpesvirales> Herpesviridae> Betaherpesvirinae> Roseolovirus> Human Betaherpesvirus 6A> Human Herpesvirus 6A (strain Uganda-1102) (HHV-6 Variant A) (Human B Lymphotropic Virus)

RefSeq

Not Available

PubMed ID

8289364 ; 7747482

Pathways Involved

Various pathway(s) in which protein is involved

KEGG

Not Available

Reactome

Not Available

Sequence

							MADERTSDSVKTRYDIALMKLNDIKIAVFRDSLSTYVEQKTGLTIQFNWPKSRCLVISTLCKIPFPTKSAAELQEMCSLLLCCPERLQLLGYVSVWGEET
RDVCLTKTLVFAGEDEKFYGLDFVNETLYLLAETTERFAVLGLRRYDPVYREKDIRFLTKIDDVLQSLIDAQDNLWKFATIVYKNSGRHYIMKSCLENND
GVFVLFLTRKEDFPSRMEWNFFSDVYESMPYDGQVIGSIGKTLLYPKTMFVMMDLSGAIYGIDTIGTGIGSCVKIADDFESFLRQGIVRGYRRYKFFHRN
INTVQEILPLCPHTSLGPTFSNNYIYDLSSEDDE
						

Length

334

Alternate Sequence

VAR_SEQ 1 191 Missing (in isoform 3)

Non-standard residue

Not Available

Date of last Sequence modification

22-07-2008

Protein Existence

Inferred from homology

Amino Acid composition

Amino Acid	Count	% Frequency	Amino Acid	Count	% Frequency
Alanine (A)			Leucine (L)
Arginine (R)			Lysine (K)
Asparagine (N)			Methionine (M)
Aspartic Acid (D)			Phenylalanine (F)
Cysteine (C)			Proline (P)
Glutamine (Q)			Serine (S)
Glutamic Acid (E)			Threonine (T)
Glycine (G)			Tryptophan (W)
Histidine (H)			Tyrosine (Y)
Isoleucine (I)			Valine (V)

Sum of Absolute Deviation from Amino Acid Occurrence Frequencies

Aliphatic Index

Instability Index

Secondary Structure features

% Number of Residues in Helices	% Number of Residues in Strands	% Number of Residues in Coils

Structural Difficulty(SD) index

Role(s)

Isoform 3 can transactivate the human immunodeficiency virus type 1 promoter.

EC

Not Available

Experimentally known GO terms

GO:0006351 ; GO:0006355

Subcellular Location

Not Available

Domain(s)

Not Available

Motif(s)

Not Available

Methods of 3D structure generation

Predicted/Modelled

Experimetally known structure

Not Available

Active Site(s)

Not Available

Predicted 3D Structures

Protein couldn't be modeled using I-Tasser and Raptor X because of length constraints of the software.

Experimentally known Ligand(s)

Not Available

Virtually Screened Ligands

Virtual screening has been performed using RASPD

						Million Molecules

					
Best 20 Hit molecules 
Not Available