Reviewed
Homo Sapiens (Human) [TaxID: 9606]
ORF2
♦Capsid polyprotein VP90 [Cleaved into: Capsid polyprotein VP70
♦ Capsid protein VP34
♦ Capsid protein VP27
♦ Capsid protein VP25]
♦ Capsid protein VP34
♦ Capsid protein VP27
♦ Capsid protein VP25]
Human Astrovirus-6 (HAstV-6)
Viruses> SsRNA Viruses> SsRNA Positive-strand Viruses> No DNA Stage> Astroviridae> Mamastrovirus> Mamastrovirus 1> Human Astrovirus-6 (HAstV-6)
Not Available
Various pathway(s) in which protein is involved
Not Available
Not Available
MASKSDKQVTVEVNNTGRGRSKSRARSQSRGRGRSVKITVNSQNKGRRQNGRNKRQSNQRVRNIVNKQLRKQGVTGPKPAICQKATATLGTIGSNTSGTT
EIEACILLNPVLVEDATGSTQFGPVQALGAQYSMWKLKYLNVRLTSMVGASAVNGTVVRVSLNPTSTPSSTSWSGLGARKHLDVTVGKNAIFKLKPSDLG
GPRDGWWLTNTNDNASDTLGPSVEIHTLGRTMSSYQNQQFTGGLFLVELASEWCFTGYAANPNLVNLVKSTDKQVNVTFEGSAGTPLVMNVPAASHFART
VAQRSTLPTSMARAGENTASDTVWQVLNTAVSAAELVTPPPFNWLVKGGWWFVKLIAGRVRNGNRSFYVYASYQDALSNKPALCTGSTSGSMRTRPAVMT
TLQFTQMNQPSLGHGETPATLGRSIPTSGETLKVLLTVGNPISPNETNKQTWVNKTIEPPGAVVRIGRDTQHYCTLNGFTLITKVDWFTEEFQPSEEPAP
VQGLMVLGDNHKKADVYAAQQYKNPITNDKQEVTSVFLVRVNEGFQVTNHLSYFYRNSVNTDAVENIKIRSATRHTTVRFYQGSWYLLTSTVLHTGPPVS
GWLWMNQELQNDQAYIIDQGIMHLITPPPVSSQIYFEMATLVPQTRSGGGETGLELVMGLSDDEYPISHVNDEEETEYETESDEDETDEVDRFDLCCTSD
SEDDIENNRVTLLSTLINQGVTVDRATMITNRAFPTPNYKPRREPSNDLLAPSDCLATARSHACNETCQLSGSRGHAE
EIEACILLNPVLVEDATGSTQFGPVQALGAQYSMWKLKYLNVRLTSMVGASAVNGTVVRVSLNPTSTPSSTSWSGLGARKHLDVTVGKNAIFKLKPSDLG
GPRDGWWLTNTNDNASDTLGPSVEIHTLGRTMSSYQNQQFTGGLFLVELASEWCFTGYAANPNLVNLVKSTDKQVNVTFEGSAGTPLVMNVPAASHFART
VAQRSTLPTSMARAGENTASDTVWQVLNTAVSAAELVTPPPFNWLVKGGWWFVKLIAGRVRNGNRSFYVYASYQDALSNKPALCTGSTSGSMRTRPAVMT
TLQFTQMNQPSLGHGETPATLGRSIPTSGETLKVLLTVGNPISPNETNKQTWVNKTIEPPGAVVRIGRDTQHYCTLNGFTLITKVDWFTEEFQPSEEPAP
VQGLMVLGDNHKKADVYAAQQYKNPITNDKQEVTSVFLVRVNEGFQVTNHLSYFYRNSVNTDAVENIKIRSATRHTTVRFYQGSWYLLTSTVLHTGPPVS
GWLWMNQELQNDQAYIIDQGIMHLITPPPVSSQIYFEMATLVPQTRSGGGETGLELVMGLSDDEYPISHVNDEEETEYETESDEDETDEVDRFDLCCTSD
SEDDIENNRVTLLSTLINQGVTVDRATMITNRAFPTPNYKPRREPSNDLLAPSDCLATARSHACNETCQLSGSRGHAE
778
Not Available
Not Available
01-11-1996
Inferred from homology
Amino Acid | Count | % Frequency | Amino Acid | Count | % Frequency |
---|---|---|---|---|---|
Alanine (A) | Leucine (L) | ||||
Arginine (R) | Lysine (K) | ||||
Asparagine (N) | Methionine (M) | ||||
Aspartic Acid (D) | Phenylalanine (F) | ||||
Cysteine (C) | Proline (P) | ||||
Glutamine (Q) | Serine (S) | ||||
Glutamic Acid (E) | Threonine (T) | ||||
Glycine (G) | Tryptophan (W) | ||||
Histidine (H) | Tyrosine (Y) | ||||
Isoleucine (I) | Valine (V) |
% Number of Residues in Helices | % Number of Residues in Strands | % Number of Residues in Coils |
---|---|---|
The capsid polyprotein VP90 self-assembles and undergoes a proteolytic cleavage by host caspases to yield the VP70 virions. This immature virion is composed of 180 VP70 subunits with 90 dimeric spikes and displays a T=3 icosahedral symmetry. The mature virion is obtained by further cleavages resulting in three structural proteins VP25, VP27 and VP34. This forms contains only 30 spikes located on the icosahedral 2-fold axes. Plays a role in the attachment to target host cell. This attachment induces virion internalization through clathrin-dependent endocytosis (By similarity).
Not Available
Virion .
Not Available
Not Available
Predicted/Modelled
Not Available
Not Available
Protein couldn't be modeled using I-Tasser and Raptor X because of length constraints of the software.
Not Available
- Million Molecules
Best 20 Hit molecules
Not Available