Results | viHumans

UniProt ID

Q5XX03

Status

Reviewed

Host

Epomops Franqueti (Franquet's Epauleted Fruit Bat) [TaxID: 77231]; Homo Sapiens (Human) [TaxID: 9606]; Myonycteris Torquata (Little Collared Fruit Bat) [TaxID: 77243]

Gene Name

VP30[Gene ID: 3160773 ]

Protein Name

Minor nucleoprotein VP30 (Transcription activator VP30)

Organism Name

Sudan Ebolavirus (strain Human/Uganda/Gulu/2000) (SEBOV) (Sudan Ebola Virus)

Taxonomic Lineage

Viruses> SsRNA Viruses> SsRNA Negative-strand Viruses> Mononegavirales> Filoviridae> Ebolavirus> Sudan Ebolavirus> Sudan Ebolavirus (strain Human/Uganda/Gulu/2000) (SEBOV) (Sudan Ebola Virus)

RefSeq

Not Available

PubMed ID

16139097

Pathways Involved

Various pathway(s) in which protein is involved

KEGG

vg:3160773

Reactome

Not Available

Sequence

							MERGRERGRSRNSRADQQNSTGPQFRTRSISRDKTTTDYRSSRSTSQVRVPTVFHKKGTGTLTVPPAPKDVCPTLRKGFLCDSNFCKKDHQLESLTDREL
LLLIARKTCGSTDSSLNIAAPKDLRLANPTADDFKQDGSPKLTLKLLVETAEFWANQNINEVDDAKLRALLTLSAVLVRKFSKSQLSQLCESHLRRENLG
QDQAESVLEVYQRLHSDKGGAFEAALWQQWDRQSLTMFISAFLHVALQLSCESSTVVISGLRLLAPPSVNEGLPPAPGEYTWSEDSTT
						

Length

288

Alternate Sequence

Not Available

Non-standard residue

Not Available

Date of last Sequence modification

23-11-2004

Protein Existence

Inferred from homology

Amino Acid composition

Amino Acid	Count	% Frequency	Amino Acid	Count	% Frequency
Alanine (A)			Leucine (L)
Arginine (R)			Lysine (K)
Asparagine (N)			Methionine (M)
Aspartic Acid (D)			Phenylalanine (F)
Cysteine (C)			Proline (P)
Glutamine (Q)			Serine (S)
Glutamic Acid (E)			Threonine (T)
Glycine (G)			Tryptophan (W)
Histidine (H)			Tyrosine (Y)
Isoleucine (I)			Valine (V)

Sum of Absolute Deviation from Amino Acid Occurrence Frequencies

Aliphatic Index

Instability Index

Secondary Structure features

% Number of Residues in Helices	% Number of Residues in Strands	% Number of Residues in Coils

Structural Difficulty(SD) index

Role(s)

Acts as a transcription anti-termination factor immediately after transcription initiation, but does not affect transcription elongation. This function has been found to be dependent on the formation of an RNA stem-loop at the transcription start site of the first gene. Binds to RNA (By similarity).

EC

Not Available

Experimentally known GO terms

GO:0003723 ; GO:0006351 ; GO:0019013 ; GO:0030430 ; GO:0046872

Subcellular Location

Virion. Host cytoplasm .

Domain(s)

Not Available

Motif(s)

Not Available

Methods of 3D structure generation

Predicted/Modelled

Experimetally known structure

Not Available

Active Site(s)

Not Available

Predicted 3D Structures

Protein couldn't be modeled using I-Tasser and Raptor X because of length constraints of the software.

Experimentally known Ligand(s)

Not Available

Virtually Screened Ligands

Virtual screening has been performed using RASPD

						Million Molecules

					
Best 20 Hit molecules 
Not Available