Results | viHumans

UniProt ID

Q5MQC7

Status

Reviewed

Host

Homo Sapiens (Human) [TaxID: 9606]

Gene Name

M 6[Gene ID: 3200428 ]

Protein Name

Membrane protein (M protein) (E1 glycoprotein) (Matrix glycoprotein) (Membrane glycoprotein)

Organism Name

Human Coronavirus HKU1 (isolate N1) (HCoV-HKU1)

Taxonomic Lineage

Viruses> SsRNA Viruses> SsRNA Positive-strand Viruses> No DNA Stage> Nidovirales> Coronaviridae> Coronavirinae> Betacoronavirus> Human Coronavirus HKU1 (HCoV-HKU1)> Human Coronavirus HKU1 (isolate N1) (HCoV-HKU1)

RefSeq

NC_006577.2 ; AY597011.2

PubMed ID

15613317

Pathways Involved

Various pathway(s) in which protein is involved

KEGG

vg:3200428

Reactome

Not Available

Sequence

							MNKSFLPQFTSDQAVTFLKEWNFSLGVILLFITIILQFGYTSRSMFVYLIKMIILWLMWPLTITLTIFNCFYALNNAFLAFSIVFTIISIVIWILYFVNS
IRLFIRTGSWWSFNPETNNLMCIDMKGKMFVRPVIEDYHTLTATVIRGHLYIQGVKLGTGYTLSDLPVYVTVAKVQVLCTYKRAFLDKLDVNSGFAVFVK
SKVGNYRLPSSKPSGMDTALLRA
						

Length

223

Alternate Sequence

Not Available

Non-standard residue

Not Available

Date of last Sequence modification

01-02-2005

Protein Existence

Inferred from homology

Amino Acid composition

Amino Acid	Count	% Frequency	Amino Acid	Count	% Frequency
Alanine (A)			Leucine (L)
Arginine (R)			Lysine (K)
Asparagine (N)			Methionine (M)
Aspartic Acid (D)			Phenylalanine (F)
Cysteine (C)			Proline (P)
Glutamine (Q)			Serine (S)
Glutamic Acid (E)			Threonine (T)
Glycine (G)			Tryptophan (W)
Histidine (H)			Tyrosine (Y)
Isoleucine (I)			Valine (V)

Sum of Absolute Deviation from Amino Acid Occurrence Frequencies

Aliphatic Index

Instability Index

Secondary Structure features

% Number of Residues in Helices	% Number of Residues in Strands	% Number of Residues in Coils

Structural Difficulty(SD) index

Role(s)

Component of the viral envelope that plays a central role in virus morphogenesis and assembly via its interactions with other viral proteins.

EC

Not Available

Experimentally known GO terms

GO:0016021 ; GO:0019031 ; GO:0019058 ; GO:0039503 ; GO:0039547 ;
GO:0039660 ; GO:0044178 ; GO:0055036

Subcellular Location

♦ Virion membrane
♦ Multi-pass membrane protein . Host Golgi apparatus membrane
♦ Multi-pass membrane protein . Note=Largely embedded in the lipid bilayer. .

Domain(s)

Not Available

Motif(s)

Not Available

Methods of 3D structure generation

Predicted/Modelled

Experimetally known structure

Not Available

Active Site(s)

Not Available

Predicted 3D Structures

Protein couldn't be modeled using I-Tasser and Raptor X because of length constraints of the software.

Experimentally known Ligand(s)

Not Available

Virtually Screened Ligands

Virtual screening has been performed using RASPD

						Million Molecules

					
Best 20 Hit molecules 
Not Available