Results | viHumans

UniProt ID

Q1PD52

Status

Reviewed

Host

Chlorocebus Aethiops (Green Monkey) (Cercopithecus Aethiops) [TaxID: 9534]; Homo Sapiens (Human) [TaxID: 9606]; Rousettus Aegyptiacus (Egyptian Rousette) (Egyptian Fruit Bat) [TaxID: 9407]

Gene Name

VP35

Protein Name

Polymerase cofactor VP35

Organism Name

Lake Victoria Marburgvirus (strain Angola/2005) (MARV)

Taxonomic Lineage

Viruses> SsRNA Viruses> SsRNA Negative-strand Viruses> Mononegavirales> Filoviridae> Marburgvirus> Marburg Marburgvirus> Lake Victoria Marburgvirus (strain Angola/2005) (MARV)

RefSeq

NC_001608.3 ; DQ217792.1

PubMed ID

16775337

Pathways Involved

Various pathway(s) in which protein is involved

KEGG

Not Available

Reactome

Not Available

Sequence

							MWDSSYMQQVSEGLMTGKVPIDQVFGTNPLEKLYKRRKPKGTVGLQCSPCLMSKATSTDDIIWDQLVVRKTLADLLIPINRQISDIQSTLSEVTTRVHEI
ERQLHEITPVLKMGRTLEAISKGMSEMLAKYDHLVISTGRTTAPAAAFDAYLNEHGVPPPQPAIFKDLGVAQQACSKGTTVKNATTDAADKMSKVLELSE
ETFSKPNLSAKDLALLLFTHLPGNNTPFHILAQVLSKIAYKSGKSGAFLDAFHQILSEGENAQAALTRLSRTFDAFLGVVPPVIRVKNFQTVPRPCQKSL
RAVPPNPTIDKGWVCVYSSEQGETRALKI
						

Length

329

Alternate Sequence

Not Available

Non-standard residue

Not Available

Date of last Sequence modification

16-05-2006

Protein Existence

Inferred from homology

Amino Acid composition

Amino Acid	Count	% Frequency	Amino Acid	Count	% Frequency
Alanine (A)			Leucine (L)
Arginine (R)			Lysine (K)
Asparagine (N)			Methionine (M)
Aspartic Acid (D)			Phenylalanine (F)
Cysteine (C)			Proline (P)
Glutamine (Q)			Serine (S)
Glutamic Acid (E)			Threonine (T)
Glycine (G)			Tryptophan (W)
Histidine (H)			Tyrosine (Y)
Isoleucine (I)			Valine (V)

Sum of Absolute Deviation from Amino Acid Occurrence Frequencies

Aliphatic Index

Instability Index

Secondary Structure features

% Number of Residues in Helices	% Number of Residues in Strands	% Number of Residues in Coils

Structural Difficulty(SD) index

Role(s)

Acts as a polymerase cofactor in the RNA polymerase transcription and replication complex.

EC

Not Available

Experimentally known GO terms

GO:0006351 ; GO:0019012 ; GO:0030430

Subcellular Location

Virion. Host cytoplasm .

Domain(s)

DOMAIN 204 329 VP35 IID.

Motif(s)

Not Available

Methods of 3D structure generation

Predicted/Modelled

Experimetally known structure

Not Available

Active Site(s)

Not Available

Predicted 3D Structures

Protein couldn't be modeled using I-Tasser and Raptor X because of length constraints of the software.

Experimentally known Ligand(s)

Not Available

Virtually Screened Ligands

Virtual screening has been performed using RASPD

						Million Molecules

					
Best 20 Hit molecules 
Not Available