Results | viHumans

UniProt ID

P50823

Status

Reviewed

Host

Homo Sapiens (Human) [TaxID: 9606]

Gene Name

L1

Protein Name

Major capsid protein L1

Organism Name

Human Papillomavirus Type 62

Taxonomic Lineage

Viruses> DsDNA Viruses> No RNA Stage> Papillomaviridae> Alphapapillomavirus> Alphapapillomavirus 3> Human Papillomavirus Type 62

RefSeq

Not Available

PubMed ID

15346342 ; 7963696

Pathways Involved

Various pathway(s) in which protein is involved

KEGG

Not Available

Reactome

Not Available

Sequence

							MAMWRPGDGKVYLPPTPVSKVLSTDTYVTRTNLFYYGGSSRLLTVGHPYCTLQVGQGKRATIPKVSGYQYRVFRVKLPDPNKFTLPDATLYNPDTERMVW
ACRGIEVGRGQPLGVGTSGHPLYNRLDDTENTSLLAAANDDSRDNISVDYKQTQLLIVGCKPPIGEHWTKGTLCPNAAPAPTECPPLEFKNTTIQDGDMV
ETGYGAIDFKSLQESKSEVPLDICTSTCKYPDYLQMAAEPYGDCMFFCLRREQMFARHFFNRHGTMGEALPTDLYMKGTPGSDRQMPGSYIYAPTPSGSM
VSSDSQLFNKPYWLQRAQGHNNGICWFNELFVTVVDTTRSTNFTICTASTAAAEYKATNFREFLRHTEEFDLQFIFQLCKIQLTPEIMAYLHNMNKDLLD
DWNFGVLPPPSTSLDETYHYLQSRAITCQKGAASPSPKVDPYAQMTFWTVDLKDKLSTDLDQFPLGRKFLLQAGSRPRSVAVSRKRSAPTKQSPTSAKRK
RRK
						

Length

503

Alternate Sequence

Not Available

Non-standard residue

Not Available

Date of last Sequence modification

27-09-2005

Protein Existence

Inferred from homology

Amino Acid composition

Amino Acid	Count	% Frequency	Amino Acid	Count	% Frequency
Alanine (A)			Leucine (L)
Arginine (R)			Lysine (K)
Asparagine (N)			Methionine (M)
Aspartic Acid (D)			Phenylalanine (F)
Cysteine (C)			Proline (P)
Glutamine (Q)			Serine (S)
Glutamic Acid (E)			Threonine (T)
Glycine (G)			Tryptophan (W)
Histidine (H)			Tyrosine (Y)
Isoleucine (I)			Valine (V)

Sum of Absolute Deviation from Amino Acid Occurrence Frequencies

Aliphatic Index

Instability Index

Secondary Structure features

% Number of Residues in Helices	% Number of Residues in Strands	% Number of Residues in Coils

Structural Difficulty(SD) index

Role(s)

Forms an icosahedral capsid with a T=7 symmetry and a 50 nm diameter. The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with L2 proteins. Binds to heparan sulfate proteoglycans on cell surface of basal layer keratinocytes to provide initial virion attachment. This binding mediates a conformational change in the virus capsid that facilitates efficient infection. The virion enters the host cell via endocytosis. During virus trafficking, L1 protein dissociates from the viral DNA and the genomic DNA is released to the host nucleus. The virion assembly takes place within the cell nucleus. Encapsulates the genomic DNA together with protein L2.

EC

Not Available

Experimentally known GO terms

GO:0005198 ; GO:0019062 ; GO:0039620 ; GO:0042025 ; GO:0075509

Subcellular Location

Virion . Host nucleus .

Domain(s)

Not Available

Motif(s)

Not Available

Methods of 3D structure generation

Predicted/Modelled

Experimetally known structure

Not Available

Active Site(s)

Not Available

Predicted 3D Structures

Protein couldn't be modeled using I-Tasser and Raptor X because of length constraints of the software.

Experimentally known Ligand(s)

Not Available

Virtually Screened Ligands

Virtual screening has been performed using RASPD

						Million Molecules

					
Best 20 Hit molecules 
Not Available