chemaxon.formats.recognizer

Class PDBRecognizer

java.lang.Object

chemaxon.formats.recognizer.Recognizer

chemaxon.formats.recognizer.PDBRecognizer

Deprecated.

as of Marvin 2014.07.21.0 intended for internal use only

@Deprecated
public class PDBRecognizer
extends Recognizer

PDB format recognizer.

Since:

Marvin 5.0, 06/08/2007

Version:

5.0, 10/15/2007

Author:

Miklos Vargyas, Peter Csizmadia

Field Summary

Fields

Modifier and Type	Field and Description
static int	CAN_BE Deprecated. Line can be in the given format.
static int	NO Deprecated. Line is not in the given format.
static int	SURE Deprecated. Line is surely in the given format.

Fields inherited from class chemaxon.formats.recognizer.Recognizer

needsMore

Constructor Summary

Constructors

Constructor and Description
PDBRecognizer() Deprecated.

Method Summary

Methods

Modifier and Type	Method and Description
static int	testLine(String line) Deprecated. Checks if the given parameter is a PDB record name.
static int	testRecord(String recName) Deprecated. Checks if the given parameter is a PDB record name.
chemaxon.common.util.Pair<Boolean,Collection<String>>	tryToRecognize(String line, int lineNumber) Deprecated. Checks whether the parameter line can be part of a valid (format specified) file on the given file position.

Methods inherited from class chemaxon.formats.recognizer.Recognizer

getLastProcessedLineNum, isLastLine, needsMore, tryToRecognize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NO

public static final int NO

Deprecated.

Line is not in the given format. Return value for testLine methods.

See Also:

Constant Field Values

CAN_BE

public static final int CAN_BE

Deprecated.

Line can be in the given format. Return value for testLine methods.

See Also:

Constant Field Values

SURE

public static final int SURE

Deprecated.

Line is surely in the given format. Return value for testLine methods.

See Also:

Constant Field Values

Constructor Detail

PDBRecognizer

public PDBRecognizer()

Deprecated.

Method Detail

tryToRecognize

public chemaxon.common.util.Pair<Boolean,Collection<String>> tryToRecognize(String line,
                                                                   int lineNumber)

Deprecated.

Description copied from class: Recognizer

Checks whether the parameter line can be part of a valid (format specified) file on the given file position.

Overrides:

tryToRecognize in class Recognizer

Parameters:

line - the line string

lineNumber - the position of the line

Returns:

a Pair of which second parameter gives the format name collection that is:

• Recognized to be excluded if the first parameter is false
• Positively recognized if the first parameter is true

testLine

public static int testLine(String line)

Deprecated.

Checks if the given parameter is a PDB record name.

Parameters:

line - the line

Returns:

SURE if it is surely a PDB line, CAN_BE if it can be a PDB line, NO otherwise

testRecord

public static int testRecord(String recName)

Deprecated.

Checks if the given parameter is a PDB record name.

Parameters:

recName - a potential PDB record name

Returns:

SURE if it is surely a PDB line, CAN_BE if it can be a PDB line, NO otherwise