chemaxon.checkers.runner

Class SketchCheckerRunner

java.lang.Object

chemaxon.checkers.runner.BasicCheckerRunner

chemaxon.checkers.runner.SketchCheckerRunner

All Implemented Interfaces:

CheckerRunner

public final class SketchCheckerRunner
extends BasicCheckerRunner

WARNING! THIS IS AN INTERNAL CLASS. USE IT ONLY ON YOUR OWN RISK! This class is a thread safe clone based descendant of BasicCheckerRunner. Generally it is used in the MarvinSketch integration of Structure Checker API. DO NOT USE IT ANYWHERE ELSE!

Since:

Marvin 5.7

Version:

5.7

Author:

Attila Szabo

Field Summary

Fields inherited from class chemaxon.checkers.runner.BasicCheckerRunner

backgroundThread, molecule

Constructor Summary

Constructors

Constructor and Description
SketchCheckerRunner(ConfigurationReader configurationReader) Initiate a SketchCheckerRunner instance which will can execute StructureChecker instances read from configurationReader

Method Summary

Methods

Modifier and Type	Method and Description
protected void	convertResult(StructureCheckerResult result) This method converts the result by changing the atoms and bonds back to the original instead of the cloned ones
List<StructureFixer>	getFixers(StructureCheckerResult result) Returns all the StructureFixer instances which associated with the StructureCheckerErrorType of the result
protected Molecule	getMolecule() Returns the molecule
void	setMolecule(Molecule molecule) Sets the molecule to be checked by the checkers

Methods inherited from class chemaxon.checkers.runner.BasicCheckerRunner

addPropertyChangeListener, addPropertyChangeListener, cancel, check, checkAndWait, fix, fix, getChangeSupport, getCheckerConfiguration, getCheckerList, getCurrent, getCurrentCheckerName, getIndex, getProgessLength, getResultList, getStrategy, isCanceled, isChecking, isDoodle, setCanceled, setChangeSupport, setCheckerList, setConfigurationReader, setDoodle, setIgnoreConfigurationErrors, setIndex, setResultList

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SketchCheckerRunner

public SketchCheckerRunner(ConfigurationReader configurationReader)

Initiate a SketchCheckerRunner instance which will can execute StructureChecker instances read from configurationReader

Parameters:

configurationReader - a ConfigurationReader instance

Method Detail

setMolecule

public void setMolecule(Molecule molecule)

Description copied from interface: CheckerRunner

Sets the molecule to be checked by the checkers

Specified by:

setMolecule in interface CheckerRunner

Overrides:

setMolecule in class BasicCheckerRunner

Parameters:

molecule - a Molecule instance to be checked

getMolecule

protected Molecule getMolecule()

Description copied from class: BasicCheckerRunner

Returns the molecule

Overrides:

getMolecule in class BasicCheckerRunner

Returns:

the molecule

convertResult

protected void convertResult(StructureCheckerResult result)

This method converts the result by changing the atoms and bonds back to the original instead of the cloned ones

Overrides:

convertResult in class BasicCheckerRunner

Parameters:

result - is the StructureCheckerResult instance to convert

See Also:

BasicCheckerRunner.convertResult(StructureCheckerResult)

getFixers

public List<StructureFixer> getFixers(StructureCheckerResult result)

Description copied from interface: CheckerRunner

Returns all the StructureFixer instances which associated with the StructureCheckerErrorType of the result

Specified by:

getFixers in interface CheckerRunner

Overrides:

getFixers in class BasicCheckerRunner

Parameters:

result - a StructureCheckerResult instance which identifies the current problem

Returns:

a List of StructureFixer