GeneFreq
Genefreq is a tool which can help you to solve any problem related to frequency occurences of any DNA sequence into Human Genome.
This tool works in three easy steps.
1. Frequency Counter 2. Nuclotide Sequence Extender 3. Hit Counter
This tool is very useful to identify a potential DNA drug target for different types of cancer.
1. Total Frequency Counter
Here you can Give any query DNA sequence to first box and it gives the total frequencies of that query sequence in each genome..Submit any query sequence to find total frequency in HUMAN GENOME.
2. Nuclotide Sequence Extender
If you want to know a potential drug target with the help of a transcriptor factor binding site. then here you can extend your query sequence in three ways. This program extends your query sequence in human genome when its frequency occurence become 1. then it would be a uniqe sequence in human genome and you can target this as potential drug target.
i )5'---> 3'
Chromosome No. (i.e. chr01 or chr19)
Starting Position Of Transcirption Factor Binding Site In Human Genome.
Total No. Of Nucleotide
Email Id
ii) 5' <--- 3'
Chromosome No. (i.e. chr01 or chr19)
Starting Position Of Transcirption Factor Binding
Total No. Of Nucleotide
Email Id
iii ) < -- 5' -- 3' -- >.
Chromosome No. (i.e. chr01 or chr19)
Starting Position Of Transcirption Factor Binding Site In Human Genome.
Total No. Of Nucleotide
Email Id
3. Hit Counter
This tool works on the result file of second part(Nucleotide sequence extender). This tools takes that file as a input of this program and calculate the total hit of each entry from down to above of input file in complete human genome as per chromosome. It takes the last line of input file as first input then the previous and so on.
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