RM2TS: From Ramchandran Maps to
Tertiary Structures of Proteins.

The missing link between Ramachandran map and tertiary structure

This methodology works for input sequences less than 100 amino acid residues.Please retrieve your files as the data will be deleted after 10 hours. RM2TS+ (Beta version) for bigger proteins has been developed now and is available to the users at http://www.scfbio-iitd.res.in/rm2ts+

3D - 1D Representation : Conversion of a Tertiary Structure to an Alphanumeric String.

1D - 3D Prediction : Sequence to Tertiary Structure Prediction.

Sequence Information:

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Upload

or

Please provide a sequence information in plain text(*.txt) or FASTA(*.fasta) format. Load sample protein sequence and secondary structure data

Add secondary structure (3 state: HEC) Predict secondary structure

Secondary structure prediction takes 8-10 minutes. Kindly bear with us.

or

Please upload or provide a secondary strucuture information data(*.txt)

Result - Classes Assigned

Model 1 classes:

Model 2 classes:

Model 3 classes:

Model 4 classes:

Model 5 classes:

Model 6 classes:

Click on the classes to modify.

Energy Minimise after structure prediction

Helix, Sheet, Coil,

RM2TS: From Ramchandran Maps to Tertiary Structures of Proteins.

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RM2TS: From Ramchandran Maps to
Tertiary Structures of Proteins.