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Data Set

ParDOCK+ DATA SET

The 226 protein-ligand complexes uploaded here have been prepared in the force field compatible manner. Experimental binding free energies in kcal/mol (EBFE), Predicted binding free energies in kcal/mol (PBFE), Root Mean Square Deviation(RMSD) in Å, name of the protein and the ligand charge of each complex are provided. Click on the PDB ID to download the protein-ligand complex.

S. No.PDB IDRef. LigandEBFEPBFERMSD
11avnHSM-5.35-5.950.391
21azmAZM-8.37-6.710.405
31cttDHZ-6.2-6.630.445
41f57DCY-7.74-6.290.361
51ft7PLU-7.11-6.780.355
61hdqINF-7.99-6.660.375
71heeLHY-7.33-7.670.374
81hlk113-6.86-7.040.517
91iy7CXA-8.5-7.710.357
101jao0D3-8.13-8.110.481
111jaq01S-6.15-6.880.575
121m2xMCO-5.7-6.980.384
131mmrSRS-7.41-7.660.485
141ndvFR0-8.13-7.90.503
151ndwFR2-7.18-7.370.412
161ndyFR3-8.47-7.920.436
171os00PQ-8.28-8.150.384
181qf2TI3-8.13-7.740.373
191qjiPKF-6.66-6.890.373
201wn6BST-6.42-6.270.379
211z9gRRT-7.74-7.140.378
221zdpTIO-7.88-7.240.383
231zs0EIN-8.44-7.940.474
242afwAHN-6.55-6.30.411
252afx1BN-7.07-6.660.402
262amt1AA-6.09-8.180.410
272ctcHFA-5.34-5.740.368
282ewbZED-8.37-7.960.360
292fu8MCO-6.45-7.470.355
302gklPD2-7.34-7.360.344
312gzl2AA-6.62-6.860.439
322h15B19-7.78-7.850.377
332nmxM25-7.65-7.530.344
342nn1M28-7.99-6.970.375
352q38LSA-7.18-7.20.385
362qdtI38-7.12-7.380.409
372uz9XAN-7.84-7.240.364
382v77PAY-6.95-7.510.338
392wehFB1-8.17-7.560.391
402x7uWZA-7.23-7.30.392
412x95X95-6.79-8.080.354
422x97RX4-7.77-7.510.363
432yhwBM3-7.69-7.720.402
442z94TLD-8.03-6.840.379
453b3cPLU-5.46-5.260.329
463b7iPLU-7.99-7.540.331
473bkkKAF-8.35-8.270.292
483bklKAW-8.47-8.380.355
493bl1BL1-7.69-7.660.455
503ehyTBL-8.03-6.440.426
513fvlBHK-8.33-7.550.373
523hkq1SD-7.33-7.590.378
533hzmKDO-7.58-6.590.387
543iofIFS-7.16-7.250.346
553iogSDF-7.58-6.410.363
563lkaM4S-3.87-6.180.410
573n9sTD4-7.22-7.10.405
583ohiHDX-6.66-6.680.429
593oilVZ5-7.8-8.480.380
603p4vPMX-7-7.30.384
613pb7PBD-7.88-6.940.359
623pb8AHN-7.19-6.630.352
633s76EVH-6.93-7.180.388
643t01PPF-6.15-7.040.351
653ucjAZM-8.24-8.050.365
663vh9HQY-8.56-7.440.302
674bupSAM-6.79-7.350.543
684e3gPHB-6.82-6.780.354
694exsX8Z-6.05-7.370.380
704f9uPBD-8.28-7.880.331
714jsaFB2-6.81-6.550.373
724keq5PN-5.24-6.90.369
734kp5E1F-8.35-7.880.486
744kp8E1G-7.52-7.40.524
754kyhZST-8.13-7.760.388
764kykIMN-6.51-7.090.306
774l191UA-8.37-7.510.561
784l2l1V6-7.82-7.740.377
794m3pHCS-7.41-7.390.444
804pqaX8Z-7.62-7.630.332
814q6eKR5-8.48-8.120.370
824q7p3MH-5.93-6.670.354
834q7s2YU-6.07-6.090.393
844q7v5MH-4.93-6.190.350
854q817MH-4.15-5.60.363
864q833FH-5.75-6.130.360
874q874FH-6.66-6.640.365
884q8x7FH-4.9-6.280.359
894q8yHQT-3.62-5.680.356
904q9yM3T-7.8-7.650.371
914tlnLNO-5.11-5.40.405
924yrd3IT-6.27-6.270.431
934zx15L3-8.43-8.250.380
945c1w4XS-6.95-7.330.252
955c284XV-7.77-6.890.357
965d2r56W-7.99-7.860.415
975dpxL3B-6.12-6.760.361
985efhFKS-8.37-8.870.354
995eh75O5-4.78-6.590.391
1005eh85O6-4.25-6.180.362
1015ehv5ON-4.23-5.940.360
1025eij5OT-7.29-6.710.360
1035ev83R9-7.16-7.620.343
1045evb3R9-6.86-7.420.346
1055evdVC2-6.86-7.530.351
1065evk3C7-6.75-7.470.337
1075floJ4K-4.32-5.810.371
1085flqIO2-4.08-6.160.352
1095gj9VGL-6.85-6.750.422
1105gja6PC-7.62-7.50.430
1115gmn949-6.49-7.070.419
1125i3aHQE-6.93-6.940.396
1135lif6XO-8.06-8.410.413
1145lwd79E-8.56-8.970.412
1155mnrJC2-7.49-8.560.425
1165n2t8KK-6.97-8.50.388
1175n2z8JH-7.29-7.990.390
1185n318LB-7.95-8.330.400
1195n3v8L5-5.96-6.950.376
1205n3y8L2-6.9-7.690.385
1215nw79C2-7.92-7.840.360
1225od19RQ-8.18-7.70.453
1235ti07CZ-5.78-6.220.356
1245txy7Q1-7.49-7.60.393
1255ty97QV-7.15-6.930.350
1265tya7QS-6.15-6.070.370
1275u0d7R7-6.23-6.640.347
1285u0e7R4-7.01-6.670.369
1295u0f7R1-7.51-7.180.374
1305u0g7QY-6.29-6.720.368
1315vgy9AA-5.74-6.060.376
1325wcm4NZ-5.49-5.790.449
1335wgpAUD-7.71-6.460.343
1345yhg8UX-8.26-7.940.394
1356b4d53X-8.39-6.760.418
1366b98D07-6.38-6.850.389
1376c7wLMS-7.51-7.770.352
1386d1aTWB-5.97-6.040.321
1396d1bFUJ-5.37-6.210.317
1406d1dGTV-6.14-6.060.328
1416d1gYKG-6.14-6.320.325
1426d1hKED-5.11-6.270.332
1436d1iT6Z-5.61-5.660.306
1446d1j7SX-5.83-6.240.314
1456d1kM3Q-4.3-5.730.307
1466d2o4MZ-7.27-7.320.372
1476dd0P9T-7.52-7.660.427
1486eqpBUW-8.18-8.090.355
1496f9uD0W-7.04-7.70.397
1506g3vFO9-8.29-8.230.381
1516g98ER5-8.44-8.440.481
1526h29FK8-7.71-7.730.372
1536ic2BBJ-8.29-7.80.367
1546ugnQ77-8.4-7.180.425
1556ugrQ71-8.61-70.414
1566uh0PX7-8.33-7.390.413
S. No.PDB IDRef. LigandEBFEPBFERMSD
11atrADP-9.55-7.810.435
21b38ATP-9.06-9.030.418
31bzyIMU-11.45-9.510.485
41d2eGDP-8.24-8.420.417
51ew8PAE-3.1-5.630.391
61ex8A4P-8.69-9.290.411
71grpICT-5.11-5.610.417
81m1bSPV-6.4-6.190.431
91mrnT5A-6.2-6.950.433
101mrs5HU-5.44-7.530.420
111orkATC-12.09-9.590.517
121q54BHI-8.03-7.930.391
131q91DPB-5.7-7.690.387
141tq4GDP-8.5-8.010.391
151uhoVDN-12.66-9.690.446
161wc1TAT-5.49-6.450.394
171yfzIMP-5.97-7.710.413
181z4oGL1-6.2-7.820.390
192cbzATP-5.39-7.860.374
202ewsANP-9.09-8.450.391
212haw2PN-6.75-7.320.373
222oi2DP6-8.65-8.40.414
232r7501G-8.44-7.40.379
242rioADP-6.44-6.290.000
252we3DUT-6.08-7.20.436
262x2rX2O-9.77-8.070.417
272xbpATP-6.89-7.090.473
282yazUMP-7.06-8.060.378
292zkjADP-7.52-7.550.415
303a1cACP-5.49-6.690.403
313a1dADP-5.65-6.430.418
323bbfGDP-7.25-7.260.347
333hwwAKG-9.77-7.610.406
343jukUPG-6.71-7.70.467
353oczSRA-10.24-7.950.378
363oe4610-10.25-7.990.381
373oe5611-9.44-7.740.400
383ozrOZR-7.07-6.970.326
393ozsOZS-7.32-7.460.405
403oztOZZ-5.67-7.690.425
413pglRZX-7.27-7.150.402
423q7qGNP-7.76-7.850.504
433tfn2CJ-9.02-80.379
443tfp03L-8.88-7.830.367
453uxkBHO-6.77-6.730.335
463uxlCFI-7.65-6.930.333
474azcNGW-8.04-7.930.350
484ea2RWZ-8.84-7.270.410
494en4GT0-7.58-6.820.398
504fl1ANP-4.5-6.780.394
514fl2ANP-5.02-6.210.063
524i3zADP-5.89-7.080.350
534idnGNP-7.19-7.350.386
544idoGDP-6.77-6.860.393
554jneATP-8.04-7.850.373
564kaxGTP-6.55-7.390.440
574lhvGDP-13.73-9.760.414
584lpsGDP-7.88-8.340.367
594m6uTTN-3.76-5.590.331
604ncnGTP-7.78-7.690.391
614nkt2KH-8.19-7.780.382
624pvyJD1-9.21-8.090.415
634qrh0O2-7.07-6.731.314
644rd0GDP-9.09-8.580.373
654rd3GDP-8.88-8.570.368
664rd6GDP-8.62-8.580.360
674rhx3QF-7.96-7.250.366
684uofDAT-6.64-6.940.357
694uohADP-6.55-6.580.431
704x8oAP5-9.06-10.190.434
714z2b4LC-10.65-8.30.287
725b254QJ-14.06-9.870.378
735c1w4XS-6.95-7.290.253
745c2oTTP-6.25-6.360.422
755d6jATP-6.09-6.890.388
765dh45AV-9.94-7.920.382
775ectDUP-7.25-7.250.408
785eddDUP-7.19-7.180.392
795evzADP-9.02-7.740.427
805f2rACP-5.87-6.340.375
815g2bLQY-9.61-9.610.391
825g576M5-11.53-9.930.389
835g5v8Z4-9.2-8.120.401
845gofGTP-5.56-6.180.391
855hvaDUP-5.311-7.040.441
865irrGSP-7.23-9.010.481
875l8c908-9.61-9.670.378
885l8yCVA-8.78-7.510.449
895ldpATP-5.72-6.260.366
905ltnXI7-7.23-7.170.436
915m04GDP-8.7-7.980.414
925w44GY6-8.84-7.810.388
935we9GY7-9.91-7.920.373
946b97CZY-9.1-7.80.388
956b98D07-6.38-6.820.372
966cvfCDP-8.72-7.820.382
976cvvATP-5.65-7.050.406
986czbUTP-5.94-7.270.418
996czcTTP-6.56-7.20.392
1006czeITT-5.53-7.220.426
1016d9sG4P-8.18-7.090.425
1026f9vD0Z-9.28-7.960.464
1036fhkADP-10.31-8.080.396
1046g2lEJ8-9.84-7.890.401
1056gxqFFZ-9.75-9.550.364
1066h77ATP-10.06-10.040.389
1076j72GTP-8.41-8.080.410
1086j7eAGS-6.92-6.930.443
1096jdiAGS-7.01-7.240.425
1106jdlAGS-6.71-7.040.403
1116jonDTP-6.7-7.060.449
1126mxc5GP-7.63-7.690.387
1136rfnK3W-9.2-9.370.425
1146rfwK1Q-8.92-7.950.396
1156sgeGTP-10.31-9.530.455
S. No.PDB IDRef. LigandEBFEPBFERMSD
11ax0A2G-4.3-6.380.377
21b8yIN7-10.77-9.90.548
31cgl0ED-9.43-9.540.556
41cizDPS-10.21-10.270.462
51jao0D3-8.13-8.740.502
61jaq01S-6.15-6.460.491
71mmrSRS-7.41-7.460.452
81os00PQ-8.28-9.310.341
91oxrAIN-7.12-7.310.444
101qf0TI2-10.13-10.220.379
111qf1TI1-10.05-9.760.387
121td7NFL-6-6.090.538
131ucnADP-7.16-7.150.429
141zs0EIN-8.44-7.80.512
152d1nFA4-11.19-9.490.474
162d1oFA4-10.57-9.850.486
172gvvDI9-5.35-7.870.388
182hu637A-5.23-7.620.394
192jdmMFU-7.41-6.380.407
202ri9LDY-4.42-5.090.376
212vzrGCU-5.87-5.80.339
222w47UNF-6.84-6.930.372
232yayDUP-8.37-7.940.379
242yhwBM3-7.69-9.240.394
253ehxBDL-10.43-9.320.398
263ehyTBL-8.03-7.050.403
273f15HS1-11.12-8.20.413
283f16HS3-11.3-8.660.422
293f17HS4-11.85-9.10.423
303f18HS5-10.16-9.360.412
313f19HS6-9.87-7.380.401
323kqrOPE-6.08-6.080.424
333lirEEC-9.5-9.510.457
343ljgEEF-10.61-10.080.449
353ljzLA3-11.17-9.710.442
363lkaM4S-3.87-5.780.407
373n2uD3X-10.76-9.090.404
383n2vJT5-10.31-8.660.398
393n35A2G-4.63-6.040.380
403qlmPLM-8.74-7.990.430
413ts4EEG-11.97-9.440.425
423tskQEG-9.84-9.280.403
433tt4E1S-11.36-9.50.452
443tvcE3P-10.62-9.760.492
453zdvF1A-7.52-6.20.364
463zyf147-6.66-6.70.361
474a6sGS9-7.14-6.350.387
484aypSMD-8.4-7.770.321
494ayuN8P-6.49-6.640.384
504efsE37-11.8-9.440.471
514gqlR47-13.16-9.620.562
524gr0R4B-13.11-9.870.470
534gr3R45-10.72-9.940.441
544gr8R4C-10.75-10.490.396
554i71AGV-10.62-9.180.340
564i72UA2-12.42-9.240.342
574i74MBY-9.22-9.580.364
584lxzSHH-9.25-7.70.386
594ly120Y-9.96-8.090.296
605cxa55L-11.05-9.40.468
615czmR47-11.42-9.390.447
625d3c56O-14.27-9.870.520
635iwgIWX-8.87-8.030.415
645ix06EZ-8.62-7.840.380
655kvaSAM-7.06-8.380.403
665l9iSNW-9.61-8.090.330
675l9lGOP-9.75-8.050.331
685mehDMJ-8.67-7.730.337
696f1jEDG-6.34-6.790.353
706mm2ATP-7.43-6.980.543
71966cRS2-10.49-8.10.579
S. No.PDB IDRef. LigandEBFEPBFERMSD
11h2kOGA-4.01-5.50.369
21kmyBPY-7-6.970.369
31lgtBP3-8.37-7.350.350
41m2xMCO-5.7-7.760.370
51mmrSRS-7.41-8.180.462
61ndwFR2-7.18-7.840.425
71qjiPKF-6.66-7.280.376
81wn6BST-6.42-7.780.354
92afwAHN-6.55-7.260.380
102afx1BN-7.07-7.10.383
112amt1AA-6.09-8.960.413
122buvDHB-5.49-5.420.398
132fu8MCO-6.45-7.870.341
142gklPD2-7.34-7.20.322
152gzl2AA-6.62-8.240.439
162nmxM25-7.65-7.630.342
172q38LSA-7.18-7.720.413
182qdtI38-7.12-7.590.349
192x7uWZA-7.23-8.080.405
203acl3F1-8.54-9.320.446
213hf8ML0-8.94-7.920.425
223oujAKG-8.3-7.280.392
233pcnDHY-5.02-6.150.387
244aq6OMD-6.59-6.170.365
254kifPPY-6.64-6.690.406
265ad18LC-9.94-8.010.336
275his60P-6.46-7.020.414
286gdyAKG-7.49-7.510.408
296n0jK8S-7.37-9.350.405
S. No.PDB IDRef. LigandEBFEPBFERMSD
11o7oUDP-6.16-8.350.346
21pdzPGA-5.08-5.130.415
31q54BHI-8.03-7.740.396
41ro6ROL-8.87-6.470.359
51t5fDHH-5.79-5.940.392
62rk8PPF-5-5.150.341
72rkaPGA-4.12-5.160.359
82rkd3PP-3.73-5.380.350
92rkeSAT-5.6-5.280.348
102wzfUDP-9.61-8.250.404
113f806HN-5.79-6.90.418
123g3rANP-8.89-7.720.452
133kv2NNH-10.05-8.180.377
143lp7HAR-7.47-7.70.409
153mfwB3U-4.83-7.250.389
163pfp035-8.84-7.230.360
173zhxFM6-9.17-7.550.370
184dmwUDP-6.78-7.940.414
194ipiLMR-7.3-5.710.362
204ipjLMR-6.68-6.170.385
214pf5M3N-7.52-6.360.413
224q3tHAR-8.89-8.050.384
234q3uNNH-8.84-8.070.411
244rfrRHN-8.98-7.620.380
254umaGZ3-7.43-7.570.331
265hwuDUP-7.23-8.280.420
275ivv6EN-8.72-7.820.376
285ivy6EO-8.84-7.810.420
295uv2LA6-6.04-7.20.367
305w44GY6-8.84-7.570.383
315we9GY7-9.91-7.810.386
326dq4K0I-6.75-7.130.397
336eytUDP-7.85-8.010.391
346p5oO2Y-6.23-6.30.341
S. No.PDB IDRef. LigandEBFEPBFERMSD
110gsVWW-8.78-9.010.369
21a28STR-11.38-11.20.349
31a4rGNH-9.14-8.290.548
41a99PUT-7.82-7.080.441
51a9mU0E-9.5-10.810.506
61aaqPSI-11.53-11.590.563
71add1DA-9.25-8.890.449
81adlACD-7.36-8.170.400
91ado13P-8.24-80.396
101afkPAP-9.09-7.420.386
111aflATR-8.62-8.330.430
121ai4DHY-3.43-5.810.401
131b554IP-10.16-9.350.516
141bp0UMP-7.41-7.650.458
151bv7XV6-14.14-12.180.532
161d2eGDP-8.24-7.980.409
171d4hBEH-13.73-10.850.453
181d4iBEG-12.15-11.820.409
191drkRIP-9.36-7.040.404
201drvA3D-8.98-9.780.504
211dudDUD-6.62-70.451
221ebwBEI-12.42-12.050.426
231ebyBEB-13.31-10.50.423
241f8bDAN-7.41-7.360.405
251g98PA5-7.82-7.410.354
261garU89-13.73-9.810.503
271gfyCOL-6.97-6.980.448
281gpkHUP-7.37-8.30.326
291gyxBEZ-3.4-6.50.383
301heeLHY-7.33-7.350.374
311hpv478-12.66-11.190.425
321hpxKNI-15.46-11.770.403
331hshMK1-12.93-11.130.544
341hvhQ82-10.93-11.350.577
351hvrXK2-13.05-11.440.553
361hwr216-11.43-11.140.515
371izhQ50-10.57-10.860.396
381iziQ50-9.05-10.50.464
391j01XIL-8.88-7.320.378
401j14BEN-6.16-6.110.378
411j16BEN-5.27-5.790.369
421jsvU55-7.82-7.280.365
431kdkDHT-12.42-9.640.436
441kelAAH-9.99-8.880.382
451km3UP6-6.74-6.950.307
461kzkJE2-14.26-11.880.396
471m0oMPM-3.17-7.480.436
481m2rMNY-8.87-7.390.384
491m2xMCO-5.7-7.350.376
501mmrSRS-7.41-7.310.499
511msmJE2-14.38-11.840.390
521msnJE2-12.48-11.530.393
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