Sl. No

Programs

Web Site Address

Remarks

1

ChemGenome

http://scfbio-iitd.res.in/chemgenome2.0

PhysicoChemical

2

FGENESH

http://www.softberry.com/all.htm

HMM

3

GeneID

http://www1.imim.es/geneid.html

Ab initio

4

GeneParser

http://beagle.colorado.edu/~eesnyder/GeneParser.html

Ab initio

5

GeneWise

www.sanger.ac.uk/Software/Wise2/genewiseform.shtml

Homology

6

Genie

http://www.fruitfly.org/seq_tools/genie.html

Ab initio

7

GeneMark

http://exon.gatech.edu/GeneMark

Ab initio

8

GenLang

http://www.cbil.upenn.edu/genlang /genlang.html

Ab initio

9

GENSCAN

http://genes.mit.edu/GENSCAN.html

Ab initio

10

GeneSeqer

http://bioinformatics.iastate.edu/cgi-bin/gs.cgi

Homology

11

GENVIEW

www.itba.mi.cnr.it/webgene

Ab initio

12

Glimmer

http://www.tigr.org/software/glimmer/

Ab initio

13

Glimmer HMM

http://www.tigr.org/software/GlimmerHMM/

Ab initio

14

GRAILEXP

http://compbio.ornl.gov/grailexp

Ab initio

15

MORGAN

http://www.cs.jhu.edu/labs/compbio/morgan.html

Ab initio

16

MZEF

http://rulai.cshl.edu/software/index1.htm

Ab initio

17

ORFgene

http://125itba.mi.cnr.it/~webgene/wwworfgene2.html

Homology

18

PredictGenes

http://mendel.ethz.ch:8080/Server/subsection3_1_8.html

Homology

19

PROCRUSTES

http://hto-13.usc.edu/software/procrustes/index.html

Homology

20

Rosetta

http://crossspecies.lcs.mit.edu

Homology

21

VEIL

http://www.tigr.org/~salzberg/veil.html

Ab initio

22

Xpound

ftp://igs-server.cnrs-mrs.fr/pub/Banbury/xpound

Ab initio

Sl no.

Programs

Web site Address

Remarks

1

GeneSplicer

http://www.tigr.org/tdb/GeneSplicer/gene_spl.html

HMM

2

NetGene2

http://cbs.dtu.dk/services/NetGene2

NN+HMM

3

NetPlantGene

http://cbs.dtu.dk/services/NetPGene

NN+HMM

4

NNSplice

http://www.fruitfly.org/seq_tools/splice.html

NN

5

SplicePredictor

http://deepc2.psi.iastate.edu/cgi-bin/sp.cgi

Discriminant analysis