List of Bioinformatics Softwares for Genomics, Proteomics and Drug Design:

Software

List of Softwares

S.NO.	Software	Description	Version
Proteomics
1	Bhageerath	Predicts native-like structures for small globular proteins	alpha
2	Protein Structure Generation	Structure Generation from given dihedrals	1.0
3	Persistence Length	Filters for Globular Protein Evaluation	1.0
4	Radius of Gyration	Filters for Globular Protein Evaluation	1.0
5	Hydrophobicity	Filters for Globular Protein Evaluation	1.0
6	ProRegIn	Protein Regularity Index	1.0
7	Protein structure optimizer	Energy minimizer for proteins	1.0
8	ProSEE - Scoring Function for Protein Structure Evaluation	Calculates intramolecular energy of a protein in component-wise break up.	1.0
Genomics
1	Gene Evaluator(ChemGenome1.1)	Characterizes a DNA sequence as gene or nongene	1.1
2	Gene Predictor(ChemGenome2.0)	Whole genome analysis	2.0
Drug Design
1	Binding Affinity Prediction of Protein-Ligand (BAPPL) server	Computes the binding free energy of a protein-ligand complex.	1.0
2	Binding Affinity Prediction of Protein-Ligand complex containing Zinc (BAPPL-Z) server	Computes the binding free energy of a metalloprotein-ligand complex containing zinc.	1.0
3	Drug-DNA Interaction Energy (PreDDICTA)	Calculates the Drug-DNA interaction energy .	1.0
Utilities
1	Lipinski Filter	Checks whether a drug satisfies the 5 Lipinski rules.	1.0
2	Superimpose	Fits two molecules and calculates the RMSD between them	1.0
3	Protein Angle Descriptor	Calculates the angles & dihedral in the main chain of the protein	1.0
4	Volume Calculator	Calculates the volume of a molecule.	1.0