Class name |
Deprecated function name |
Use instead |
| chemaxon.struc.Molecule | toFormat(String) | chemaxon.formats.MolExporter#exportToFormat(Molecule, String) |
| chemaxon.struc.Molecule | exportToFormat(String) | chemaxon.formats.MolExporter#exportToFormat(Molecule, String) |
| chemaxon.struc.Molecule | toBinFormat(String) | chemaxon.formats.MolExporter#exportToBinFormat(Molecule, String) |
| chemaxon.struc.Molecule | exportToBinFormat(String) | chemaxon.formats.MolExporter#exportToBinFormat(Molecule, String) |
| chemaxon.struc.Molecule | toObject(String) | chemaxon.formats.MolExporter#exportToObject(Molecule, String) |
| chemaxon.struc.Molecule | exportToFormat(String) | chemaxon.formats.MolExporter#exportToObject(Molecule, String) |
| chemaxon.struc.Molecule | exportToObject(Molecule[],String,MolExportModule) | chemaxon.formats.MolExporter#exportToObject(Molecule[], String, MolExportModule) |
| chemaxon.struc.Molecule | getProperty(String) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.MoleculeGraph | addExplicitHydrogens(int) | chemaxon.calculations.Hydrogenize#addHAtoms(MoleculeGraph, MolAtom[], int) |
| chemaxon.struc.MoleculeGraph | addExplicitHydrogens(int,MolAtom[]) | chemaxon.calculations.Hydrogenize#addHAtoms(MoleculeGraph, MolAtom[], int) |
| chemaxon.struc.MoleculeGraph | hydrogenize(boolean) | chemaxon.calculations.Hydrogenize#addHAtoms(MoleculeGraph) chemaxon.calculations.Hydrogenize#removeHAtoms(MoleculeGraph) |
| chemaxon.struc.MoleculeGraph | addExplicitLonePairs() | chemaxon.calculations.Hydrogenize#addLonePairs(MoleculeGraph, MolAtom[]) |
| chemaxon.struc.MoleculeGraph | removeExplicitLonePairs() | chemaxon.calculations.Hydrogenize#removeLonePairs(MoleculeGraph) |
| chemaxon.struc.MoleculeGraph | implicitizeHydrogens(int) | chemaxon.calculations.Hydrogenize#removeHAtoms(MoleculeGraph, int) |
| chemaxon.struc.MoleculeGraph | implicitizeHydrogens(int,MolAtom[]) | chemaxon.calculations.Hydrogenize#removeHAtoms(MoleculeGraph, MolAtom[], int) |
| chemaxon.struc.MoleculeGraph | implicitizeHydrogens(int,MolAtom[],boolean) | chemaxon.calculations.Hydrogenize#removeHAtoms(MoleculeGraph, MolAtom[], int, boolean) |
| chemaxon.struc.MoleculeGraph | clean(int,String) | chemaxon.calculations.clean.Cleaner#clean(MoleculeGraph, int, String) |
| chemaxon.struc.MoleculeGraph | partialClean(Molecule[],String) | chemaxon.calculations.clean.Cleaner#partialClean(Molecule, Molecule[], String) |
| chemaxon.struc.MoleculeGraph | partialClean(MoleculeGraph,int[],String) | chemaxon.calculations.clean.Cleaner#partialClean(MoleculeGraph, MoleculeGraph, int[], String) |
| chemaxon.struc.MoleculeGraph | partialClean(int,int[],String) | chemaxon.calculations.clean.Cleaner#partialClean(MoleculeGraph, int, int[], String) |
| chemaxon.struc.MoleculeGraph | clean(int,String,MProgressMonitor) | chemaxon.calculations.clean.Cleaner#clean(MoleculeGraph, int, String, MProgressMonitor) |
| chemaxon.struc.MoleculeGraph | arrangeComponents() | chemaxon.marvin.util.CleanUtil#arrangeComponents(MoleculeGraph, boolean, boolean) |
| chemaxon.struc.MDocument | parseMRV(String) | chemaxon.formats.MolImporter#parseMRV(String) |
| chemaxon.struc.MDocument | exportToFormat(String) | chemaxon.formats.MolExporter#exportToFormat(MDocument, String) |
| chemaxon.struc.MDocument | exportToBinFormat(String) | chemaxon.formats.MolExporter#exportToBinFormat(MDocument, String) |
| chemaxon.struc.MDocument | exportToObject(String) | chemaxon.formats.MolExporter#exportToObject(MDocument, String) |
| chemaxon.struc.MolAtom | hasSMARTSProps() | chemaxon.marvin.io.formats.smiles.SmartsAtomQuerifier#hasSMARTSProps(MolAtom) |
| chemaxon.struc.MolAtom | hasSMARTSPropsExcluding(String) | chemaxon.marvin.io.formats.smiles.SmartsAtomQuerifier#hasSMARTSPropsExcluding(MolAtom, String) |
| chemaxon.struc.MolAtom | setSMARTS(String) | chemaxon.marvin.io.formats.smiles.SmartsAtomQuerifier#setSMARTS(MolAtom, String) |
| chemaxon.struc.MolAtom | getQuerystr() | getQueryString() |
| chemaxon.struc.MolAtom | setQuerystr(String) | chemaxon.marvin.io.formats.smiles.SmartsAtomQuerifier#setQuerystr(MolAtom, String) setQueryString(String) |
| chemaxon.struc.MolAtom | setQuerystr(String, int) | chemaxon.marvin.io.formats.smiles.SmartsAtomQuerifier#setQuerystr(MolAtom, String, int) setQueryString(String) |
| chemaxon.struc.MPropertyContainer | getString(String) | chemaxon.marvin.io.MPropHandler#convertToString(MPropertyContainer, String) |
| chemaxon.struc.MProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.MProp | convertToString(String) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MDocument.Prop | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MByteArrayProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MBooleanProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MHashProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MListProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MDoubleArrayProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MDoubleProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MFontProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MHCoords3DProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MIntegerArrayProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MIntegerProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MMoleculeProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MObjectProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
| chemaxon.struc.prop.MStringProp | convertToString(String,int) | chemaxon.marvin.io.MPropHandler#convertToString(MProp, String) |
Change in constructors |
||
| chemaxon.struc.prop.MByteArrayProp | constructor now throws IllegalArgumentException | |
| chemaxon.struc.prop.MDoubleArrayProp | constructor now throws IllegalArgumentException | |
| chemaxon.struc.prop.MHCoords3DProp | constructor now throws IllegalArgumentException | |
| chemaxon.struc.prop.MIntegerArrayProp | constructor now throws IllegalArgumentException | |
| chemaxon.struc.prop.MIntegerProp | constructor now throws IllegalArgumentException | |
| chemaxon.struc.prop.MMoleculeProp | MMoleculeProp(String) | chemaxon.marvin.io.MPropHandler#createMMoleculeProp(String) |