Deprecated elements in the API |
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| Name of deprecated class, field or method | Deprecation version | Recommended class, field or method |
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ValenceCheckOptions.ValenceCheckOptions(boolean localAromatic, boolean traditionalNallowed) | Marvin 6.2 | chemaxon.core.calculations.valencecheck.ValenceCheckOptions.Builder
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MolAtom.getRadical() | Marvin 6.2 | chemaxon.struc.MolAtom.getRadicalValue()
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MolAtom.setRadical(int r) | Marvin 6.2 | chemaxon.struc.MolAtom.setRadicalValue(Radical)
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MolBond.isRemovable() | Marvin 6.2 | Not supported feature. |
Molecule.RM_KEEP_LEAVINGGROUPS | Marvin 6.2 | Not supported feature. |
Molecule.isGUIContracted() | Marvin 6.2 | chemaxon.struc.Molecule.hasContractedSgroup()
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Molecule.mergeAtoms(MolAtom that, MolAtom node) | Marvin 6.2 | chemaxon.struc.util.moleculeutil.MergeUtil.mergeAtoms(MolAtom, MolAtom, boolean)
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Molecule.setGUIContracted(boolean contract, int opts) | Marvin 6.2 | chemaxon.struc.Molecule.expandSgroups(int)
chemaxon.struc.Molecule.contractSgroups(int) chemaxon.struc.sgroup.Expandable.LEAVE_COORDS_UNCHANGED |
Molecule.setGUIContracted(boolean contract) | Marvin 6.2 | chemaxon.struc.Molecule.expandSgroups(int)
chemaxon.struc.Molecule.contractSgroups(int) chemaxon.struc.sgroup.Expandable.LEAVE_COORDS_UNCHANGED |
MoleculeGraph.createBHtab() | Marvin 6.2 | No replacement. |
MoleculeGraph.insertAtom(int i, MolAtom atom) | Marvin 6.2 | chemaxon.struc.MoleculeGraph
chemaxon.struc.MoleculeGraph.add(MolAtom) |
MoleculeGraph.insertBond(int i, MolBond bond) | Marvin 6.2 | chemaxon.struc.MoleculeGraph
chemaxon.struc.MoleculeGraph.add(MolBond) |
MoleculeGraph.mergeAtoms(MolAtom replacementAtom, MolAtom origAtom) | Marvin 6.2 | chemaxon.struc.util.moleculeutil.MergeUtil.mergeAtoms(MolAtom, MolAtom, boolean)
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MoleculeGraph.replaceBond(MolBond oldb, MolBond newb) | Marvin 6.2 | chemaxon.struc.MoleculeGraph
chemaxon.struc.MoleculeGraph.removeBond(MolBond) chemaxon.struc.MoleculeGraph.add(MolBond) |
MoleculeGraph.setAtom(int i, MolAtom atom) | Marvin 6.2 | chemaxon.struc.MoleculeGraph
chemaxon.struc.MoleculeGraph.removeAtom(int) chemaxon.struc.MoleculeGraph.add(MolAtom) chemaxon.struc.MolAtom |
MoleculeGraph.setBond(int i, MolBond b) | Marvin 6.2 | chemaxon.struc.MoleculeGraph
chemaxon.struc.MoleculeGraph.removeBond(MolBond) chemaxon.struc.MoleculeGraph.add(MolBond) |
RgMolecule.mergeAtoms(MolAtom that, MolAtom a) | Marvin 6.2 | chemaxon.struc.util.moleculeutil.MergeUtil.mergeAtoms(MolAtom, MolAtom, boolean)
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RgMolecule.replaceBond(MolBond olde, MolBond newe) | Marvin 6.2 | chemaxon.struc.MoleculeGraph
chemaxon.struc.RgMolecule.removeBond(MolBond) chemaxon.struc.RgMolecule.add(MolBond) |
RgMolecule.setAtom(int iu, MolAtom node) | Marvin 6.2 | chemaxon.struc.MoleculeGraph
chemaxon.struc.RgMolecule.removeAtom(MolAtom) chemaxon.struc.RgMolecule.add(MolAtom) |
RgMolecule.setBond(int iu, MolBond edge) | Marvin 6.2 | chemaxon.struc.MoleculeGraph
chemaxon.struc.RgMolecule.removeBond(MolBond) chemaxon.struc.RgMolecule.add(MolBond) |
RxnMolecule.mergeAtoms(MolAtom that, MolAtom node) | Marvin 6.2 | chemaxon.struc.util.moleculeutil.MergeUtil.mergeAtoms(MolAtom, MolAtom, boolean)
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RxnMolecule.replaceBond(MolBond olde, MolBond newe) | Marvin 6.2 | chemaxon.struc.MoleculeGraph
chemaxon.struc.RxnMolecule.removeBond(MolBond) chemaxon.struc.RxnMolecule.add(MolBond) |
RxnMolecule.setAtom(int iu, MolAtom node) | Marvin 6.2 | chemaxon.struc.MoleculeGraph
chemaxon.struc.RxnMolecule.removeAtom(MolAtom) chemaxon.struc.RxnMolecule.add(MolAtom) |
RxnMolecule.setBond(int iu, MolBond edge) | Marvin 6.2 | chemaxon.struc.MoleculeGraph
chemaxon.struc.RxnMolecule.removeBond(MolBond) chemaxon.struc.RxnMolecule.add(MolBond) |
SelectionMolecule.setBond(int i, MolBond bond) | Marvin 6.2 | chemaxon.struc.SelectionMolecule.removeBond(MolBond)
chemaxon.struc.SelectionMolecule.add(MolBond) |
Sgroup.setGUIStateRecursively(boolean contract, int opts) | Marvin 6.2 | chemaxon.struc.Molecule.setGUIContracted(boolean)
chemaxon.struc.Molecule.setGUIContracted(boolean, int) |
Sgroup.setGUIStateRecursively(boolean v) | Marvin 6.2 | chemaxon.struc.Molecule.setGUIContracted(boolean)
chemaxon.struc.Molecule.setGUIContracted(boolean, int) |
Sgroup.setXState(int state, int opts) | Marvin 6.2 | chemaxon.struc.Sgroup.setXState(int)
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Expandable.COORDS_UPDATE | Marvin 6.2 | Not supported feature. |
Expandable.REVERSIBLE_EXPAND | Marvin 6.2 | chemaxon.struc.sgroup.Expandable.LEAVE_COORDS_UNCHANGED
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SuperatomSgroup.cloneLeavingGroups(SuperatomSgroup sasg) | Marvin 6.2 | Not supported feature. |
SuperatomSgroup.expandOther(int opts, Molecule moltoexpand) | Marvin 6.2 | chemaxon.struc.sgroup.SuperatomSgroup.expand(int)
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SuperatomSgroup.getParentSgroupGraph() | Marvin 6.2 | chemaxon.struc.sgroup.SuperatomSgroup.getSgroupGraph()
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SuperatomSgroup.removeLeavingGroup(int order) | Marvin 6.2 | Not supported feature. |
SuperatomSgroup.setCrossingBondType(int order, BondType newType) | Marvin 6.2 | Not supported feature. |
SuperatomSgroup.setLeavingGroup(int order, int atNo, String alternativeName, BondType crossingBondType) | Marvin 6.2 | Not supported feature. |
SuperatomSgroup.setLeavingGroup(int order, int atNo, String alternativeName) | Marvin 6.2 | Not supported feature. |
SuperatomSgroup.setLeavingGroup(int order, int atNo) | Marvin 6.2 | Not supported feature. |
SuperatomSgroup.setLeavingGroupAlternativeName(int order, String alternativeName) | Marvin 6.2 | Not supported feature. |
SuperatomSgroup.updateAttachmentPoints() | Marvin 6.2 | chemaxon.struc.sgroup.SuperatomSgroup.calculateAttachmentPoints()
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IteratorFactory.INCLUDE_CHEMICAL_ATOMS | Marvin 6.2 | chemaxon.util.iterator.IteratorFactory.INCLUDE_CHEMICAL_ATOMS_ONLY
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Removed elements in the API |
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| Name of removed class, field or method | Removal version | Recommended class, field or method |