Results | viHumans

UniProt ID

Q50LE5

Status

Reviewed

Host

Homo Sapiens (Human) [TaxID: 9606]

Gene Name

ORF2[Gene ID: 5075907 ]

Protein Name

♦Capsid protein precursor [Cleaved into: 7 kDa polypeptide
♦ Capsid protein (CP)]

Organism Name

Human Picobirnavirus (strain Human/Thailand/Hy005102/-) (PBV)

Taxonomic Lineage

Viruses> DsRNA Viruses> Picobirnaviridae> Picobirnavirus> Human Picobirnavirus> Human Picobirnavirus (strain Human/Thailand/Hy005102/-) (PBV)

RefSeq

Not Available

PubMed ID

15847933 ; 19407816

Pathways Involved

Various pathway(s) in which protein is involved

KEGG

vg:5075907

Reactome

Not Available

Sequence

							MKQNDTKKTTQRRNSKKYSSKTNRGTKRAPRDQEVGTGAQESTRNDVAWYARYPHILEEATRLPFAYPIGQYYDTGYSVASATEWSKYVDTSLTIPGVMC
VNFTPTPGESYNKNSPINIAAQNVYTYVRHMNSGHANYEQADLMMYLLAMDSLYIFHSYVRKILAISKLYTPVNKYFPRALLVALGVDPEDVFANQAQWE
YFVNMVAYRAGAFAAPASMTYYERHAWMSNGLYVDQDVTRAQIYMFKPTMLWKYENLGTTGTKLVPLMMPKAGDNRKLVDFQVLFNNLVSTMLGDEDFGI
MSGDVFKAFGADGLVKLLAVDSTTMTLPTYDPLILAQIHSARAVGAPILETSTLTGFPGRQWQITQNPDVNNGAIIFHPSFGYDGQDHEELSFRAMCSNM
ILNLPGEAHSAEMIIEATRLATMFQVKAVPAGDTSKPVLYLPNGFGTEVVNDYTMISVDKATPHDLTIHTFFNNILVPNAKENYVANLELLNNIIQFDWA
PQLYLTYGIAQESFGPFAQLNDWTILTGETLARMHEVCVTSMFDVPQMGFNK
						

Length

552

Alternate Sequence

Not Available

Non-standard residue

Not Available

Date of last Sequence modification

07-06-2005

Protein Existence

Evidence at protein level

Amino Acid composition

Amino Acid	Count	% Frequency	Amino Acid	Count	% Frequency
Alanine (A)			Leucine (L)
Arginine (R)			Lysine (K)
Asparagine (N)			Methionine (M)
Aspartic Acid (D)			Phenylalanine (F)
Cysteine (C)			Proline (P)
Glutamine (Q)			Serine (S)
Glutamic Acid (E)			Threonine (T)
Glycine (G)			Tryptophan (W)
Histidine (H)			Tyrosine (Y)
Isoleucine (I)			Valine (V)

Sum of Absolute Deviation from Amino Acid Occurrence Frequencies

Aliphatic Index

Instability Index

Secondary Structure features

% Number of Residues in Helices	% Number of Residues in Strands	% Number of Residues in Coils

Structural Difficulty(SD) index

Role(s)

The capsid protein self-assembles to form an icosahedral capsid with a T=2 symmetry made of 120 subunits.

EC

Not Available

Experimentally known GO terms

GO:0039617

Subcellular Location

♦ Capsid protein: Virion .
♦ 7 kDa polypeptide: Virion .

Domain(s)

Not Available

Motif(s)

Not Available

Methods of 3D structure generation

Predicted/Modelled

Experimetally known structure

Not Available

Active Site(s)

Not Available

Predicted 3D Structures

Protein couldn't be modeled using I-Tasser and Raptor X because of length constraints of the software.

Experimentally known Ligand(s)

Not Available

Virtually Screened Ligands

Virtual screening has been performed using RASPD

						Million Molecules

					
Best 20 Hit molecules 
Not Available