SKC Import options details

Atoms

The following atom features from the SKC file format are imported to Marvin:

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General properties
Type Supported
Isotope Supported
ChargeSupported
RadicalSupported
ValenceSupported
Hydrogen displaynot supported
Atom numberSupported
Number positionSupported
ValueSupported
PseudoNot supported
AliasNot supported
BeilsteinImported as Pseudo atom
MapSupported
Query properties
No Implicit HydrogensImported as 'Number of implicit hydrogens=0'
Unsaturated atoms (Unsaturated bond to atom)Supported
Exact change[reaction]Not supported
Ring bond countSupported, r* imported as rb*
Reaction stereoSupported
Enhanced stereoSupported
Prevent hydrogen substituentsSupported
Allow these atomsSupported, imported as Atom List
Prohibit these atomsSupported, imported as Atom Not List
Font properties
Font, size, bold, italicSupported
Underline, formulaNot supported
Atom colorSupported

Bonds

The following bond features from the SKC file format are imported to Marvin as:

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Bond type
SingleSupported
DoubleSupported
TripleSupported
UpSupported (Single Up)
DownSupported (Single Down)
EitherSupported (Single Up or Down)
Dbl EitherSupported (Double Cis or Trans)
AnySupported
AromaticSupported
Single/DoubleSupported (Single or Double)
Double/AromaticSupported (Double or Aromatic)
Single/AromaticSupported (Single or Aromatic)
Reacting center
CenterSupported
Make/BreakSupported
ChangeSupported
Make/ChangeSupported
Not CenterSupported
Topology
RingSupported
ChainSupported
Other
Stereo searchSupported
ThicknessSupported
ColorSupported
Crossed bondSupported

Reaction

The following reaction features from the SKC file format are imported to Marvin as:

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Reaction arrowSupported, some types of reaction arrows are converted to single reaction arrows
ReactantSupported
ProductSupported
AgentSupported
Multiple step reactionNot supported, converted to graphic arrows
Reaction and R-group combinationSupported
Reaction and S-group combinationSupported
Resonance Resonance arrow type
Equilibrium Equilibrium arrow type
Degree arrows Not yet supported, will be converted to electron flows

Note that only one reaction arrow per file is imported because Marvin does not support multistep reactions yet.

Groups

The following groups from the SKC file format are imported to Marvin as:

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S-groups
Anypolymer (anyp) Any polymer S-group type
Component (c) Component S-group type
Copolymer (co) Copolymer S-group type
Copolymer, alternating (alt) Copolymer S-group type with alternating polymer S-group subtype
Copolymer, block (blk) Copolymer S-group type with block polymer S-group subtype
Copolymer, random (ran) Copolymer S-group type with random polymer S-group subtype
Crosslink (xl) Crosslink S-group type
Generic () Generic S-group type
Graft (grf) Graft S-group type
Mer (mer) Mer S-group type
Mixture, ordered (f) Mixture S-group type
Mixture, unordered (mix) Mixture S-group type
Modification (mod) Modification S-group type
Monomer (mon) Monomer S-group type
Multiple Group (#) Multiple group S-group type
SRU (n) Label and bracket type supported, repeat pattern not yet supported
Superatom S-groupSupported
Repeating unit with repetition ranges(e.g.2,4-6)Supported
Attached dataSupported
R-groups
R-group Supported
Attachment points Supported
R-Logic Supported

Graphical objects

All graphical objects except for graphic arc and smooth spline are supported. Line style and Polygon Fill Color are not supported. All text box attributes are imported except for Underlined.

Generic labels

All generic labels are imported to Marvin:

Attach data

Import of Data to Atom, Data to Bond, Data to Molecule and Data to Brackets is supported.

Chemistry

Import of Autoname, Link node, Create Chiral Flag and residue is supported.

Chirality

Import of CHIRAL and AND attributes is supported.

Known Issues

The import of the following features has not been implemented yet:

Import options

Fsg Ungroup S-groups with 3 or more attachment points.

Back to SKC file format page