File Formats in Marvin
Basic Export Options
Document formats:
Marvin Documents (MRV)
(
text
)
Schema and validation
Molecule formats:
CML
(
text
)
Molfiles and compressed molfiles
(
text
)
MDL molfiles, RGfiles, SDfiles, Rxnfiles, RDfiles
Compressed molfiles
Export options
Programming interface
in Java
in JavaScript
in C and C++
Online compression
ISIS/Draw sketch file (skc)
(
binary
)
ChemDraw sketch file
(cdx
(
binary
)
, cdxml
(
text
)
)
SMILES, SMARTS and related formats
(
text
)
SMILES and SMARTS
ChemAxon Extended SMILES and SMARTS
ChemAxon SMILES Abbreviated Group
Query properties in molecule file formats
IUPAC InChI and InChIKey
(
text
)
Name
(
text
)
Sequences(Peptide, DNA, RNA)
(
text
)
Tripos
SYBYL Mol
and
Mol2
(
text
)
PDB
(
text
)
FASTA
(
text
)
XYZ
(
text
)
Gaussian Cube
(
text
)
Gaussian Input/Output
(
text
)
Markush DARC (vmn)
(
binary
)
Graphics formats:
Image export
JPEG
(
binary
)
BMP
(
binary
)
PNG
(
binary
)
EMF
(
binary
)
PDF
(
text
)
SVG
(
text
)
Export to POV-Ray
(
text
)
Image import via OSRA
Compression and encoding:
GZIP
(
binary
)
Base64
(
text
)
Molecule file conversion with the MolConverter program