Table of abbreviated S-groups

MarvinSketch's quick-reach abbreviated groups are built-in or user-defined. Their use speeds up the drawing and minor mistakes can be avoided. In this table we would like to summerize all abbreviations to be reached in MarvinSketch.

The names are not the correct IUPAC names, they are to help chemists to find the groups by their commonly used names. The description

A B C D E F G H I K L M N O P R S T U V Y Z

A

Abbreviation Full name Structure Remarks
AMP adenosine monophosphate
Ac acetyl group ac
AcAc acetoacetyl group acac
Acet acetyl group ac
Acm acetamidomethyl group acm
AcNH acetamide acnh
AcO acetate aco
AcOH acetic acid acoh
Ad adamantyl ad
ADAarabif α-D-arabinofuranose adaarabif
ADAllos α-D-allose adallos
ADAltro α-D-altrose adaltro
ADArabip α-D-arabinopyranose adarabip
Ade adenosyl ade
ADEryth α-D-erythrose aderyth
ADFruct α-D-fructose adfruct
ADGalac α-D-galactose/td> adgalac
ADGluco α-D-glucose adgluco
ADIdose α-D-idose adidose
ADLyxof α-D-lyxofuranose adlyxof
ADLyxop α-D-lyxopyranose adlyxop
ADManno α-D-mannose admanno
ADPsico α-D-psicose adpsico
ADRibof α-D-ribofuranose adribof
ADRibop α-D-ribopyranose adribop
ADSorbo α-D-sorbose adsorbo
ADTagat α-D-tagatose adtagat
ADTalos α-D-talose adtalos
ADThreo α-D-threose adthreo
ADXylof α-D-xylofuranose adxylof
ADXylop α-D-xylopyranose adxylop
Ala alanine ala
AlCl3 aluminium trichloride alcl3
All allyl group all
Alloc allyloxycarbonyl alloc
Allyl allyl allyl
Am amyl am
AmNH amylamine amnh
AmO amyloxy amo
AmO2C amyloxycarbonyl amo2c
AmOOC amyloxycarbonyl amooc
AmS amylsulfyl ams
Amyl amyl amyl
Arg arginine residue arg
Asn asparagine residue asn
Asp aspartic acid residue asp

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B

Abbreviation Full name Structure Remarks
BDAllos β-D-allose
BDAltro β-D-altrose
BDArabif β-D-arabinofuranose
BDArabip β-D-arabinopiranose
BDEryth β-D-erythrose
BDFruct β-D-fructose
BDGalac β-D-galactose
BDGluco β-D-glucose
BDGulos β-D-gulose
BDIdose β-D-idose
BDLyxof β-D-lyxofuranose
BDLyxop β-D-lyxopyranose
BDManno β-D-mannose
BDPsico β-D-psicose
BDRibof β-D-ribofuranose
BDRibop β-D-ribopyranose
BDSorbo β-D-sorbose
BDTalos β-D-talose
BDThreo β-D-threose
BDXylof β-D-xylofuranose
BDXylop β-D-xylopyranose
Benzoyl benzoyl
Benzyl benzyl
Bn benzyl
BnNH
BnO
BnO2C benzoyl
BnOOC
Boc t-butyloxycarbonyl
BocNH
Bom
Br2 bromine molecule
Brosyl brosyl
Bs
Bt
Btm/td>
Bu butyl
Bu3Sn tributyl stannate(?)
BuNH
BuO
BuO2C
BuOOC
BuS
Bz
Bzl
BzO
BzOM

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C

Abbreviation Full name Structure Remarks
C10
C10H21
C11
C11H23
C12
C12H25
C13
C13H27
C14
C14H29
C15
C15H31
C16
C16H33
C17
C17H35
C18
C18H37
C19
C19H39
C2
C20
C20H41
C21
C21H43
C22
C22H45
C23
C23H47
C24
C24H49
C25
C25H51
C2H5
C3
C3H7
C4
C4H9
C5
C5H11
C6
C6H13
C7
C7H15
C8
C8H17
C9
C9H19
CBr3
Cbz
CbzNH
c-C10H19
c-C11H21
c-C12H23
c-C13H25
c-C14H27
c-C15H29
c-C16H31
c-C17H33
c-C18H35
c-C19H37
c-C20H39
c-C21H41
c-C22H43
c-C23H45
c-C24H47
c-C25H49
c-C5H9
c-C6H11
c-C7H13
c-C8H15
c-C9H17
CCl3
Ce
CF3
CHO
Cl2
ClSO2
CN
CO2Et
CO2H
CO2iAm
CO2i-Am
CO2iBu
CO2i-Bu
CO2K
CO2Me
CO2Na
CO2n-Am
CO2n-Bu
CO2neoAm
CO2neo-Am
CO2n-Pr
CO2Ph
CO2Pr
CO2s-Am
CO2sBu
CO2s-Bu
CO2tAm
CO2t-Am
CO2tBu
CO2t-Bu
CoA
COBr
COBu
COCF3
COCl
COCO
COEt
COF
COiPr
COMe
CONEt2
CONH2
CONHEt
CONHMe
CONMe2
COOEt
COOH
COOiAm
COOK
COONa
COOPh
COOsBu
COPh
COPr
COsBu
COs-Bu
COSH
COtBu
COt-Bu
CPh3
Ct
Cy
Cys
Cyt

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D

Abbreviation Full name Structure Remarks
dA deoxyadenosine monophosphate da
DAllos D-allose dallos
DAltro D-altrose daltro
DArabi D-arabinose darabi
dC deoxycytidine monophosphate dc
Dde dde
DEAE triethylamine deae
DEIPS deips
DEryth D-erythrose deryth
DErythu derythu
DFruct D-fructose dfruct
dG deoxyguanosine monophosphate dg
DGalac D-Galactose dgalac
DGluco D-glucose dgluco
DIdose D-idose didose
Dip diisopropylphenyl dip
DLyxos D-lyxose dlyxos
DManno D-mannose dmanno
DMIPS dimethylisopropylsil(yl?) dmips
DMPM dmpm
DMPS dimethylphenylsil(?) dmps
DMS dimethylsulfide dms
DMT dimethoxytrityl dmt
DMTr dimethoxytrityl dmtr
Dnp dinitrophenyl dnp
Dns dns
DPIPS dpips
DPsico D-psicose dpsico
DPTBS diphenyl-t.butoxy silyl dptbs
DRibos D-ribose dribos
DRibul D-ribulose dribul
DSorbo D-sorbose dsorbo
dT dt
DTagat D-tagatose dtagat
DTalos D-talose dtalos
DTBMS dtbms
DTBS dtbs
DThreo D-threose dthreo
DXylos D-xylose dxylos
DXylul dxylul

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E

Abbreviation Full name Structure
Et ethyl et
Et2N diethylamine et2n
Et3N triethylamine et3n
Et3N+ triethylammonium et3n+
EtNH ethylamine etnh
EtO ethoxy eto

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F

Abbreviation Full name Structure
FMOC fluorenylmethyloxycarbonyl fmoc
For formyl for

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G

Abbreviation Full name Structure Remarks
GMP guanosine monophosphate gmp
Gln glutamine residue gln
Glu glutamic acid residue glu
Gly glycin gly
Gua guanine gua

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H

Abbreviation Full name Structure Remarks
H2 hydrogen molecule h2
H2NSO2 sulfonamide h2nso2
H2O water h2o
H2O+ hydroxonium
H2O2 hydrogenperoxide h2o2
H2SO4 sulfuric acid h2so4
Hex hexyl hex
His histidine residue his
HNO2 nitrous acid hno2
HNO3 nitric acid hno3
HONH hydroxylamine honh

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I

Abbreviation Full name Structure Remarks
I2 iodine molecule i2
iAm isoamyl, isopentyl iam
i-Am isoamyl, isopentyl iam
iAmNH iamnh
i-AmNH iamnh
iAmO iamo
i-AmO iamo
i-AmOOC i-amooc
iAmS iams
i-AmS iams
iBu isobutyl ibu
i-Bu isobutyl ibu
iBuOOC ibuooc
i-BuOOC ibuooc
i-C3H7 isopropyl ipr
i-C4H9 isobutyl ibu
i-C5H11 isopentyl, isoamyl iam
Ile L-isoleucine residue ile
iPr isopropyl ipr
i-Pr isopropyl ipr
iPrNH iprnh
i-PrNH iprnh
iPrO ipro
i-PrO ipro
iPrO2C iprooc
i-PrO2C iprooc
iPrOOC iprooc
i-PrOOC iprooc
iPrS iprs
i-PrS iprs
Ips ips

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K

Abbreviation Full name Structure Remarks
KMnO4/td> potassium permanganate kmno4
KNO2 potassium nitrite kno2
KNO3 potassium nitrate kno3

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L

Abbreviation Full name Structure Remarks
Leu leucine residue leu
Lys lysine residue lys

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M

Abbreviation Full name Structure Remarks
Mal mal
m-C6H4 meso-phenylene m-c6h4
MDIPS mdips
MDPS mdps
Me methyl me
Me2N dimethylam... me2n
Me3N trimethylamine me3n
Me3N+ me3n+
MEM mem
MeNH menh
MeO methoxy meo
MeOOC methoxycabonyl meooc
Mes mes
Met L-methionine residue met
MgBr magnesium bromide mgbr
MgCl magnesium chloride mgcl
MMT mmt
MMTr mmtr
MnO2 manganese dioxide mno2
MOM mom
m-Phenylene m-phenylene
MPM mpm
Ms ms
MSM msm
MsO mso
m-Tol m-tolyl m-tol
m-Tolyl m-tolyl m-tolyl
Mtt methyltrityl mtt

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N

Abbreviation Full name Structure Remarks
N2 nitrogen molecule
N3 azide
n-Am n-amyl
n-AmNH
n-AmO n-amyloxy
n-AmOOC
n-AmS
NaNO2 sodium nitrite
NaNO3 sodium nitrate
Naph naphtalene
NBS
n-Bu n-butyl
NBu4 tetrabutyl ammonium
n-BuNH
n-BuO n-butoxy
n-BuOOC n-butoxycarbonyl
n-BuS
NC isocyanide
n-C3H7 n-propyl
n-C4H9 n-butyl
n-C5H11 n-pentyl, n-amyl
n-C6H13 n-hexyl
NCO isocyanate
NCS isothiocyanate
neoAm neoamyl, neopentyl
neo-Am neoamyl, neopentyl
neoAmNH
neo-AmNH
neoAmO
neo-AmO
neoAmOOC
neo-AmOOC
neoAmS
neo-AmS
neo-C5H11 neoamyl, neopentyl
NEt4
NHAc
NHAm
NHBn
NHBoc
NHBu
NHCbz
NHEt
n-Hex n-hexyl
NHiAm
NHi-Am
NHiPr
NHMe
NHn-Am
NHn-Bu
NHneoAm
NHneo-Am
NHOH hydroxylamine
NHPh
NHPr
NHs-Am
NHs-Bu
NHtAm
NHt-Am
NHTos
NHTs
NHZ
NO nitroso
NO2 nitro
NO3 nitrate
Np p-nitrophenyl
n-Pr n-propyl
nPrO n-propoxy
n-PrO n-propxy

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O

Abbreviation Full name Structure Remarks
O2 oxygen molecule o2
o-C6H4 ortho-phenylene oc6h4
OK potassium oxide ok
OLi lithium oxide oli
ONa sodium oxide ona
o-Phenylene ortho-phenylene ophenylene
OPr n-propoxy opr
OTIPS otips
o-Tol ortho-tolyl otol
o-Tolyl ortho-tolyl otolyl
OTre trichloroethoxy otre
OTs tosylate (?) ots

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P

Abbreviation Full name Structure Remarks
P+Ph3
PBr3
p-C6H4
PCl3
PF6
Ph
Ph3P
Ph3P+
Phe
Phenyl
PhNH
PhO
Pht
PI3
Piv
PMB
PMBM
PMP
PNB
PO3
PO4
POBr3
Poc
POCl3
POEt2
POEt3
POI3
POOEt2
PPh2
PPh3
p-Phenylene
PPi
Pr
PrNH
Pro
Pro
Prop
p-Tol
p-Tolyl
Pv
Py pyrimidyl
Pyrim pyrimidyl

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R

Abbreviation Full name Structure Remarks
ring10
ring11
ring12
ring13
ring14
ring15
ring16
ring17
ring18
ring19
ring20
ring21
ring22
ring23
ring24
ring25
ring3 cyclopropyl
ring4 cyclobutyl
ring5 cyclopentyl
ring6 cyclohexyl
ring7 cycloheptyl
ring8 cyclooctyl
ring9 cyclononyl

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S

Abbreviation Full name Structure Remarks
s-Am sec-amyl, sec-pentyl
s-AmNH
s-AmO sec-amyloxy, sec-pentoxy
s-AmOOC
s-AmS
s-Bu sec-butyl
s-BuNH
s-BuO sec-butoxy
s-BuOOC sec-butoxycarbonyl
s-BuS
s-C5H11 sec-pentyl
SEM
Ser L-serine residue
SES
SEt
SiMe3 trimethylsilyl
SiMe3O trimethoxysilyl
SiPr isopropylsilyl
Si-Pr isopropylsilyl
SK
SLi
SMe
SNa
SnMe3 trimethyl stannium
SO2Cl
SO2NH2 sulphamide
SO3H sulphonyl
SPh
SPr
Suc succinyl

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T

Abbreviation Full name Structure Remarks
tAm
t-Am
tAmNH
t-AmNH
tAmO
t-AmO
tAmOOC
t-AmOOC
tAmS
t-AmS
TBDMS
TBDPS
TBMPS
t-Boc
TBS
TBSO
TBT
tBu
t-Bu
tBuNH
t-BuNH
tBuO
t-BuO
tBuOOC
t-BuOOC
tBuS
t-BuS
t-C4H9
t-C5H11
t-C6H13
TDS
Tf
TFA
TfO
tHex
t-Hex
tHexyl
THF tetrahydrofurane
THP
THPO
Thr L-threonine residue
Thy
TIPDS
TIPS
TIPSO
TMS
TMSO
TMT
Tol
Tos
TosNH
TosO
Tosyl
TPP
Tpt
Tre
Trityl trityl
Troc
Trp L-triptophane residue
Trt
Try
Ts
TsNH
TsO
Tyr L-tyrosine residue

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U

Abbreviation Full name Structure Remarks
Ur uridine monophosphate ur
Ura uracil(yl?) ura

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V

Abbreviation Full name Structure Remarks
Val L-valine residue val

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Z

Abbreviation Full name Structure Remarks
Z benzyloxycarbonyl z
ZNH znh

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