Serial No. Gene Name Transcription Factor Chromosome No. Starting Position  Binding Sequence Length
1 AKT2 MyoD chr19 40791913 ATGCCACCTGC 11
CREB chr19 40796835 TGGACTGCGGT 11
NF-kappaB1 chr19 40790600 CAGGGCTCCC 10
AP-1 chr19 40788299 GCTGTGTCAC 10
AP-1 chr19 40788585 GGGGCTCAGTG 11
2 APC c-Myc chr05 112072476 TGGCACGTGCCT 12
HNF-4alpha1 chr05 112071326 TGAAATTTGGCCC 13
Max1 chr05 112072476 TGGCACGTGCCT 12
C/EBPbeta chr05 112057062 GATTGCGCCACT 12
C/EBPbeta chr05 112081881 AGATGAAGAAATC 13
3 ATM Sp1 chr11 108083718 TGGGCGGGGC 10
CREB chr11 108079770 GCTGAGGCAGGC 12
p53 chr11 108139192 AGACATGCTC 10
AP-1 chr11 108138314 GGTGGCTCAC 10
c-Jun chr11 108091071 GGTGACACAG 10
4 BCL2 NF-kappaB1 chr18 60980154 GGGAACTCCC 10
p53 chr18 60992888 ATCTGTACAG 10
CREB chr18 60985408 CCGGTTGACGCTC 13
AP-2alphaA chr18 60987120 CCGCCTCCGGGCT 13
C/EBPalpha chr18 60988190 TTTTAAGCAATG 12
5 BRCA1 Sp1 chr17 41269521 GCCGAGGCGGGC 12
Bach1 chr17 41269056 ATGGTACTGTGTA 13
p53 chr17 41275932 TAGACATGTC 10
c-Jun chr17 41271815 CACTGACTCAAT 12
AP-1 chr17 41274786 GGACGCAGTG 10
6 BRCA2 p53 chr13 32875134 AGGGATGCCC 10
NF-kappaB1 chr13 32883640 TGTGCAATTTCCT 13
CREB chr13 32870704 TGTGATGTAAGC 12
CREB chr13 32889189 GTGAAGTCATC 11
CREB chr13 32890087 ATGACGCCATC 11
7 CCND1 ATF-2 chr11 69453024 AGGTGACCCCACC 13
CRE-BP1 chr11 69455864 CAGTAACGTCACA 13
NF-kappaB1 chr11 69462837 TGAGGAGCCCC 11
AP-1 chr11 69436584 AGTGGCTCAC 10
STAT5A chr11 69455443 CGTTCTTGGAAAT 13
8 COL18A1 p53 chr21 46884268 AGGCAGGCCC 10
ATF chr21 46830693 GGGTGACGTGAGCT 14
ATF chr21 46876206 CCCTGACGTCCGCC 14
NF-kappaB chr21 46826029 TGGGGACCTTCCT 13
NF-kappaB1 chr21 46808663 AGGGAGGCCC 10
9 CTSD STAT1 chr11 1777997 ACCCTTTTCCCAGA 14
STAT1beta chr11 1780035 GGCCCATTCCCAGA 14
Egr-1 chr11 1779947 CCCTCCCACTC 11
Egr-1 chr11 1799690 ACCTCCCACCC 11
c-Jun chr11 1779543 GCTGTGTCAC 10
10 DCC p53 chr18 49847510 GAGCCTTCCTTGGCATTTC  20
p53 chr18 49854093 AGACATGTCT 10
p53 chr18 49875230 GAGCAAGTCCTGCCATGTT  20
Nkx6-1 chr18 49849114 AGTTTTAATTGTAT  15
Nkx6-1  chr18 49867987 TTTCTAATTAAAAA  15
11 EGF c-Fos chr04 110814460 TGTGACTCAG 10
CREB chr04 110816874 TGAAGTCA 8
CREB chr04 110820615 GGTGACGTA 9
CREB chr04 110822464 GGTGACGCA 9
CREB chr04 110825186 GGTGATGTC 9
CREB chr04 110834176 GTGAAGTCAGC 11
AP-1 chr04 110814202 ATTAGTCAG 9
AP-1 chr04 110814460 TGTGACTCAG 10
AP-1 chr04 110827406 AATGACTCA 9
AP-1 chr04 110832909 CCTGACTTA 9
AP-1 chr04 110832774 TCTGACTCA 9
AP-1 chr04 110836255 GGTGGCTCAG 10
NF-kappaB1 chr04 110820018 TGGGGAAGTTCTC 13
12 EGFR AP-2alphaA chr07 55072263 GCCCCGCGC 9
c-Myc chr07 55072632 GTGCCAGGTGCTG 13
p53 chr07 55083419 AGGCATGCTC 10
Egr-1 chr07 55087262 GGCGGAGGAGG 11
c-Jun chr07 55095863 ATGACGTCA 9
13 ERBB2 PPAR-gamma1 chr17 37825107 AGAGGGGCAGAGGAGA 16
p300 chr17 37859823 CTGAGGGAGTAAGAG 15
p53 chr17 37851371 AGCCATGCCT 10
c-Myc chr17 37862772 TTGGCATGTGGGT 13
N-Myc chr17 37827240 GCCACGTGCCC 11
14 ERBB3 AP-1 chr12 56473839 CGTGACTCA 9
AP-1 chr12 56476154 AATGACTAAC 10
c-Jun chr12 56480110 GGTGACTGAG 10
AP-2alpha chr12 56474037 GGCCCCCGGGCC 12
Hand1 chr12 56477585 CAATACCAGACACTGTA 17
15 ESR1 FOXO3 chr06 152122328 TCAAGTAAACAACAG 15
p53 chr06 152116354 GGTCATGCCT 10
AhR chr06 152128883 CCGCAGGCTCCCGGGGCA 18
AP-1 chr06 152121909 AATGAGTCAT 10
GATA-3 chr06 152128357 GCCCTATCTC 10
16 FGF3 GATA-1 chr11 69626980 TCCCCATCTG 10
GATA-1 chr11 69630599 GCGCCATCCC 10
GATA-1 chr11 69637299 CAGCCCTATCT 11
HOXA3 chr11 69634226 ACCAATTATG 10
AP-2alphaA chr11 69632489 CGCCCGGGG 9
17 FGF4 Sp1 chr11 69590303 GGACCCCGGCCC 12
Sp1 chr11 69590327 CCGCCCGGCCCA 12
Sp1 chr11 69590348 TCGTCCCGCCCC 12
MyoD chr11 69588922 GGGCAGGTGA 10
Tal-1 chr11 69586801 CTGTAACAGCTGTCTGC 17
18 FGFR1 Sp1 chr08 38324406 ACACCCCACCCC 12
Sp1 chr08 38339815 GTCCCTGCCT 10
CREB chr08 38318566 GGGGCACATCTCAG 14
CREB chr08 38324839 TTTGGTGACGACA 13
CREB chr08 38339242 TGGAGTGCAGTG 12
19 FGFR2 E2F-2 chr10 123356334 GGCGCTAAA 9
Sox9 chr10 123361710 TGGGTAACAAGA 12
Sox9 chr10 123368265 GCCCTTTGTTCT 12
Sox5 chr10 123349798 GTCAACAATGA 11
Sox5 chr10 123351358 TCCAACAATAC 11
20 FGFR4 Ik-3 chr05 176517990 CTGCGGGGAACACC 14
COUP-TF1 chr05 176524543 CTGACCTTCGGACCC 15
HNF-1A chr05 176514211 CGGTAAATCAGTAACC 16
chr05 176514286 TGGTTACTCATTGCCC 16
POU3F2 chr05 176516184 AATCAATTCATTTAT 15
ZID chr05 176517610 GAGGCTCCATGATC 14
HNF-4alpha2 chr05 176524543 CTGACCTTCGGACCC 15
SRY chr05 176498800 AAATACAATAGG 12
SRY chr05 176504259 GTAAACAAATGA 12
21 GH1 SREBP-1a chr17 61987242 AGTCAGGTGG 10
SREBP-1a chr17 61999953 TGCCACATGA 10
SREBP-1a chr17 62007907 AGCCACGTGA 10
STAT5B chr17 62011891 CTTCCCAGAA 10
STAT5A chr17 62004754 ATAAAACAAGAAC 13
22 HRAS STAT3 chr11 555028 GCGGAAGC 8
c-Myc chr11 542288 GTGCCACTTGGT 12
c-Myc chr11 550537 AAGCCACGTGGA 12
NF-Y chr11 535617 GCCTACCATTGGCTGCG 17
Max chr11 544933 CCTGACCCCACGTGACCC 18
23 IGF1R p53 chr15 99190658 GGACACGCCC 10
STAT1 chr15 99177941 TTCTTGGAAGTGGC 14
STAT1 chr15 99201939 GATTTCCC 8
N-Myc chr15 99190720 CGCCCACGTGGTG 13
N-Myc chr15 99190722 CCCACGTGGTG 11
24 KIT Sp1 chr04 55519363 GGAGGCGGAGCT 12
AP-2gamma chr04 55523921 CTCCTCCCGGCG 12
p53 chr04 55521107 AGACATGGCC 10
GATA-2 chr04 55515663 TACCCATCTCC 11
GATA-2 chr04 55525335 GGATAAGCCC 10
25 MCC Pax-2 chr05 112622925 ACACAAACCC 10
Pbx1a chr05 112620680 AACCATCAATCAAGGG 16
Pbx1a chr05 112626525 TGATTTGCCTGATGTT 16
Pbx1a chr05 112626076 TAAGTTGATTGCTTTG 16
POU2F1 chr05 112631707 AACTATTTGCATAT 14
POU2F1 chr05 112630437 CCCCCCATTACCAG 14
Oct-B1 chr05 112629316 ACACATTTGCATAG 14
c-Myb chr05 112629827 AGCCAGTTCAG 11
26 MDM2 p53 chr12 69202750 CTGACTTGTCT 11
STAT1 chr12 69188515 TTCTGAGAAATGTG 14
STAT1 chr12 69202950 GATTTCCA 8
p300 chr12 69188832 TCAGTGAGTGAGTG 14
GATA-3 chr12 69188062 GAGATAGAG 9
27 MET p53 chr07 116320299 AGACATGCCT 10
GR chr07 116293524 AGGAACTCTGTGTTATGT 18
GR chr07 116316547 CATGACACTCTGTTCTAT 18
Sp1 chr07 116312089 TGGGCGGGGC 10
NF-1 chr07 116297072 CATGGCAGGAAGCCAGA 17
28 MYC ITF-2 chr08 128742193 TGGGGACATATGTTGTC 17
NF-kappaB chr08 128735610 TGGAATTCCCC 11
Pax-4a chr08 128751480 TGTCTCCCACCCC 13
NF-AT chr08 128739805 AGTTTTTCCAATG 13
PPAR-gamma2 chr08 128746310 CTGACCCCCGCCCTCGTT 18
29 NF2 p53 chr22 29984474 AGGCATGCGC 10
STAT3 chr22 29984227 GGCTTCCC 8
c-Fos chr22 29979932 GGTGACGCAC 10
c-Jun chr22 29979652 TGAGGTCA 8
AP-1 chr22 29992559 GGTGACTCAT 10
30 NME1 p53 chr17 49222669 AGACTGGGCTGGGCATGGT 19
p53 chr17 49225595 AGCCATGCCT 10
NF-kappaB chr17 49226667 TGGGCAATTTCCC 13
AP-1 chr17 49212823 AGTGGCTCAC 10
c-Jun chr17 49211358 TGACCTCA 8
31 NRAS p53 chr01 115262392 AGGGCATGCC 10
C/EBPalpha chr01 115251157 TACATCACCACAC 13
c-Fos chr01 115276659 TCTAAGTCAC 10
AP-1 chr01 115261942 ATGAATCAG 9
MyoD chr01 115254085 GGTGGTGGACG 11
NF-1 chr01 115250501 TCTGGTCAGACAGCCAA 17
32 PGR Sp1 chr11 100999042 CGGCTCCTCCTC 12
p53 chr11 101009115 GAGGCATTTC 10
c-Myb chr11 100997784 GCCCCCAACTCGCCGCGC 18
TBP chr11 100991516 TTTTTTAAAG 10
CHOP-10 chr11 100993321 GGAATGCAATGGGC 14
33 PHB STAT3 chr17 47502290 ATCGATCTCGGTCTTAAAC 19
Brachyury chr17 47489173 AAAGATGACAGCTCTG 16
STAT5A chr17 47489502 TATTTCCAGGAAT 13
STAT5A chr17 47494783 ACGAAGGATGTTT 13
p53 chr17 47509587 TGGGGATGCC 10
34 PLG NF-kappaB chr06 161127476 GGGGGCTTCAC 11
Sp1 chr06 161110973 GGAGGTGGGGTG 12
Egr-1 chr06 161104377 TGTGTGGGAGT 11
AP-1 chr06 161107158 GCTGATTCA 9
c-Jun chr06 161104403 GGTCACTCAG 10
35 PLAT AP-1 chr08 42072895 ATTTTAGTCACC 12
NF-kappaB chr08 42064525 GAAGTAAGTCCCC 13
GR chr08 42056746 ACAGAACTGTTTATAA 16
IRF-2 chr08 42059466 GGGTTTCTCTTTT 13
CREB chr08 42058131 GCTGCAGTG 9
36 PRL C/EBPalpha chr06 22293381 CTATACCTTACCAAGTT 17
AP-1 chr06 22290964 TCTGACTCA 9
c-Jun chr06 22298075 AACTGCAG 8
FOXO1 chr06 22293119 TGTTGTTTAC 10
STAT5B chr06 22293464 CAATTTTAGGAAA 13
37 PTH E4BP4 chr11 13514310 TACTTACTTAACA 13
c-Fos chr11 13521454 AGACGCAGTG 10
IRF-1 chr11 13507612 GTGAAAGGTAAAA 13
C/EBPbeta chr11 13511158 CTCAACACTTTG 12
aMEF-2 chr11 13510354 CATCTTAAAATAAGTTT 17
39 PTPRF CREB chr01 43986943 GGTGATGTC 9
Max1 chr01 43980196 GACCACATGTCC 12
GR chr01 43983481 TGAGCCACTGTGTCCGTC 18
GR-beta chr01 44005443 TGGAGCCCTCTGTCCTCT 18
HNF-4alpha1 chr01 43989065 GAAGGGGAAAGGCCAAG 17
40 RB1 E2F chr13 48878047 TCATGCCGCCCAA 13
MyoD chr13 48878395 TTGACAGGTGTCG 13
E2F-4 chr13 48877861 TTTTCCCGC 9
YY1 chr13 48869988 TGGCTGCCATCCTGGACCC 19
ATF-2 chr13 48877835 ACGTGACGCCGCG 13
41 SNCG AP-1 chr10 88719062 CCAATGACTCAGCT 14
Sp1 chr10 88717632 CGAGGTGGGGCC 12
Sp1 chr10 88718095 TGGGCAGGGC 10
Sp1 chr10 88718679 GGGGGCGAGGCC 12
Sp1 chr10 88720307 TGGGCGGGGC 10
43 SRC STAT3 chr20 35962565 GGCTTCCC 8
AP-1 chr20 35956199 TGAATGAATCACCC 14
NF-kappaB1 chr20 35960516 TGGGGATCCCT 11
AP-2alpha isoform 4 chr20 35975107 GCCCCGGGG 9
STAT1 chr20 35953855 TTCTGGGAAGTGGG 14
44 TFAP2C AP-2alphaA chr20 55189297 AGCCCCCAGGCC 12
AP-2alphaA chr20 55200469 ACGCCTGGAGGCG 13
AP-2alphaA chr20 55202326 CGCTCCCAGGCG 12
AP-2alphaA chr20 55205375 TGCCCGCAGGCC 12
N-Myc chr20 55192015 GCCACGTGGCT 11
45 TGFA NF-kappaB1 chr2 70776933 AAGAAAAGTCCCC 13
chr2 70780673 CCGGACAGTCCCC 13
chr2 70782497 AGGGGTTCCC 10
chr2 70785769 GGGAAAGTCCT 11
NF-kappaB chr2 70786492 AGGGAAGGACCCC 13
chr2 70794995 AAAGAAAATCCCC 13
chr2 70773652 CTGGAGTGCAGTGG 14
p53 chr2 70787960 GAGACATGCC 10
chr2 70794296 CACCATGGCAGGGCCTTCC 19
FOXD1 chr2 70792412 TCCCCTGTTTACTTTGG 17
FOXF2 chr2 70792586 TCCCTTGTTTACTATGT 17
RFX1 chr2 70776888 TATGTTGCCACAGTAACAG 19
FOXO3b chr2 70792586 TCCCTTGTTTACTAT 15
46 THRA RORalpha1 chr2 38219492 AGTGACCCTGTCAC 14
RORalpha1 chr2 38229096 CTTGACCTACTTTC 14
ER-alpha chr2 38219288 CACGGGGCGCTGAGACCCCC 20
Sp1 chr2 38202925 GGAGGCGGAGCT 12
Sp1 chr2 38216455 TGGGCAGGGT 10
Sp1 chr2 38218242 GGGGGTGGGGCT 12
Sp1 chr2 38218972 GGGGCGGGGC 10
Sp1 chr2 38222780 GGTGGCGGGGTC 12
Sp1 chr2 38222676 GGAGGCGGAGGC 12
AP-1 chr2 38199870 GGTGGCTCAC 10
AP-1 chr2 38200863 GGTGGCTCAC 10
AP-1 chr2 38201430 AGTGGCTCAC 10
AP-1 chr2 38202727 GGTGGCTCAC 10
AP-1 chr2 38209786 TTGGTAGTCACT 12
AP-1 chr2 38217840 GGTGGCTGAGA 11
47 TP53 p53 chr17 7578504 AGGGCAGGTCT 11
p53 chr17 7592715 AGGGATGCCC 10
p53 chr17 7603194 AGGCATGCACTACCATGCC 19
p53 chr17 7606362 GGACACGGACGGGCCTGGC 19
NF-kappaB chr17 7590848 GGGGAAAACCCCA 13
NF-kappaB chr17 7607641 AGAGGAATGTCACCC 15
E2F chr17 7572967 TTATGGCGGGAGG 13
E2F chr17 7578450 CATGGCGCGGACGCGG 16
AhR chr17 7589736 GTTGCAGGCGACCCGCGG 18
AhR chr17 7606300 CTCTCTCGCAGGACCGGG 18
48 TSG101 HOXA9B chr11 18541113 TTGACAGTTTCACGT 15
GR-beta chr11 18561399 AGGTCTTGTATGTCATGT 18
GR-alpha chr11 18539812 GCAGAACTGATTGCCC 16
GR-alpha chr11 18557485 CATCCTGACCAACATG 16
GR-alpha chr11 18561400 GGTCTTGTATGTCATG 16
SRY chr11 18555909 TCTTATTGTTTAC 13
FOXF2 chr11 18555910 CTTATTGTTTACAATAC 17
p53 chr11 18565471 AAGGCATGTA 10
49 PLAUR Sp1 chr11 44169766 TGCCTCCACCCC 12
Sp1 chr11 44172575 TAACCCCGCCCC 12
Sp1 chr11 44172811 AACCCCGCCC 10
Sp1 chr11 44172656 CTCCCCGCCC 10
Sp1 chr11 44172749 AACCCCCGCCCC 12
Bach2 chr11 44179758 TCGTGACTCACC 12
USF1 chr11 44174061 CGCCGCGTGGC 11
RelA chr11 44179827 GGGGGCTTCCC 11
50 VIM c-Myb chr10 17258492 GCTAACTGCC 10
c-Myb chr10 17272364 GGGGAAGGCGGTGGAGGG 18
AP-1 chr10 17257390 GTCATGACTCATTG 14
AP-1 chr10 17258358 CATGAGTCAC 10
c-Jun chr10 17268982 ATAGTGAGTCAGTC 14
c-Jun chr10 17270535 CCGGTGACTAAGCG 14
MyoD chr10 17254926 AGCACCTGCT 10
MyoD chr10 17269446 ACCCCCTGCC 10
MyoD chr10 17271896 CGGCAGGTGGA 11
MyoD chr10 17276770 AGACAGGTGCA 11
Nkx2-2 chr10 17273557 CACAAGTATTT 11
Nkx2-2 chr10 17279346 TTCAAGTGCCT 11
51 WNT10B C/EBPalpha chr12 49364119 CTCATTGCTTAGAGC 15
C/EBPalpha chr12 49367508 ACACCCATTGCCTAATA 17
PPAR-gamma1 chr12 49357239 TAGTAGAGACGGGGTT 16
PPAR-gamma1 chr12 49361981 CTCACCACTGCCCTTC 16
PPAR-gamma1 chr12 49371708 CTCCCCTTTTTCCTTC 16
E2F chr12 49366397 GTTAGGCGC 9
GATA-3 chr12 49363169 CCCCCATCT 9