Genome Analysis Software and Tools   [Help Hotline]

 

1. Gene Evaluator(ChemGenome 1.1): An automated energy based protein tertiary structure prediction web server. Starting with sequence and secondary structure information, the web server predicts 5 native-like candidate structures for the protein.

2. Gene Predictor(ChemGenome 2.0): ChemGenome 2.0 is a gene prediction web server that takes a whole genome sequence or a part of the genome as input and predicts genes in all the six reading frames.

3. Gene Translator: DNA translator accepts DNA sequences and translates into all possible Amino acid/Protein Sequence.

4. Melting Temperature Predictor (For oligonuclotide): It predicts the melting temperature of short DNA sequences (upto 70 base pairs) at a user defined salt within the specified range.

5. Genome analysis by melting: It predicts the melting temperature for longer(>70 bases) DNA sequences, and it also gives the melting profile for the sequence.

6. Gene Predictor(ChemGenome 3.0): ChemGenome 3.0 is a gene prediction tool that takes a whole genome sequence or a part of the genome of a prokaryote or virus as input and predicts genes along with their coressponding protein sequences in all the six reading frames.

7.Visualization of DNA CURVES/CANAL

8.ncRNA Gene Databank: ncRNA Gene Databank is a comprehensive database of genes of non coding RNA alongwith their product information.

9. Onco-Regulon: Onco-Regulon is an integrated database of regulatory motifs of cancer genes clubbed with Unique Sequence-Predictor (USP) a software suite that identifies unique sequences for each of these regulatory DNA motifs at the specified position in the genome.

10. Pathogen Specific DNA Drug Finder (PSDDF): PSDDF is a computational protocol for identifying unique DNA sequence(s) in the pathogen which is absent in human and related non-pathogenic strains of the microbe. In order to use the unique sequence as drug target, the protocol, in the second step, uses virtual screening against a million compound library to identify candidate small molecules which can bind to these unique DNA targets in the pathogen only.