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Validation of Bhageerath

PDB ID 1QR9
Protein Name Inhibition of HIV-1 Infectivity by the GP41 Core: Role of a Conserved Hydrophobic Cavity in Membrane Fusion
Sequence (FASTA format) SGIVQQQNNLLRAIEAQQHLLQATVWGIKQLQARSGGRGGWMEWDREINNYTSLIHSLIEESQNQQEK
Secondary Structure Information H 1-35, H 38-40, H 42-67
Native Structure 1qr9
H - Helix, B - Beta strand
The figure shows the Superimposition of the native structure with the lowest RMSD structure (PDB2) from the 10 lowest energy structures (Native is shown in Blue and lowest RMSD structure is in Red)
Predicted Structures
S.No Final 10 lowest energy structures RMSD(Å)
without end loops
1
PDB1
4.3
2
PDB2
3.8
3
PDB3
4.9
4
PDB4
5.1
5
PDB5
10.9
6
PDB6
6.0
7
PDB7
4.0
8
PDB8
4.0
9
PDB9
4.2
10
PDB10
4.6