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Validation of Bhageerath

PDB ID 1KU3
Protein Name Crystal Structure of Thermus Aquatics RNA Polymerase Sigma Subunit Fragment, Region 4
Sequence (FASTA format) ELEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHES
Secondary Structure Information H 10-21, H 30-39, H 41-59
Native Structure 1ku3
H - Helix, B - Beta strand
The figure shows the Superimposition of the native structure with the lowest RMSD structure (PDB4) from the 10 lowest energy structures (Native is shown in Blue and lowest RMSD structure is in Red)
Predicted Structures
S.No Final 10 lowest energy structures RMSD(Å)
without end loops
1
PDB1
6.6
2
PDB2
7.4
3
PDB3
6.4
4
PDB4
5.5
5
PDB5
7.2
6
PDB6
5.6
7
PDB7
6.3
8
PDB8
6.2
9
PDB9
5.6
10
PDB10
8.3