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Validation of Bhageerath

PDB ID 1DF5
Protein Name Interactions between HIV-1 GP41 Core and Detergents and their Implications for Membrane Fusion
Sequence (FASTA format) SGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARSGGRGGWMEWDREINNYTSLIHSLIEESQNQQEK
Secondary Structure Information H 4-36, H 38-40, H 42-64
Native Structure 1df5
H - Helix, B - Beta strand
The figure shows the Superimposition of the native structure with the lowest RMSD structure (PDB8) from the 10 lowest energy structures (Native is shown in Blue and lowest RMSD structure is in Red)
Predicted Structures
S.No Final 10 lowest energy structures RMSD(Å)
without end loops
1
PDB1
3.4
2
PDB2
5.3
3
PDB3
6.0
4
PDB4
6.1
5
PDB5
7.0
6
PDB6
3.8
7
PDB7
3.4
8
PDB8
3.1
9
PDB9
8.1
10
PDB10
3.4