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Validation of Bhageerath

PDB ID 1BDC
Protein Name Immunoglobulin-Binding B Domain of Staphylococcus Aureus Protein A
Sequence (FASTA format) TADNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQAPKA
Secondary Structure Information H 10-19, H 25-37, H 42-55
Native Structure 1bdc
H - Helix, B - Beta strand
The figure shows the Superimposition of the native structure with the lowest RMSD structure (PDB5) from the 10 lowest energy structures (Native is shown in Blue and lowest RMSD structure is in Red)
Predicted Structures
S.No Final 10 lowest energy structures RMSD(Å)
without end loops
1
 PDB1
7.7
2
 PDB2
6.1
3
 PDB3
6.6
4
 PDB4
8.3
5
 PDB5
4.8
6
 PDB6
7.0
7
 PDB7
7.5
8
 PDB8
5.0
9
 PDB9
6.7
10
 PDB10
6.6

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